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Literature DB >> 24174434

Great ape genomics.

Abstract

The great ape families are the species most closely related to our own, comprising chimpanzees, bonobos, gorillas, and orangutans. They live exclusively in tropical rainforests in Central Africa and the islands of Southeast Asia. Due to their close evolutionary relationship with humans, great apes share many cognitive, physiological, and morphological similarities with humans. The members of the great ape family make obvious models to facilitate the further understanding about humans' biology and history. This review will discuss how the recent addition of genome-wide data from great apes has furthered humans' understanding of these species and humanity, especially in the realm of evolutionary genetics.

Entities: Species

Keywords: conservation genetics; demography; evolution; great apes; natural selection; population size

Mesh：

Year: 2013 PMID： 24174434 PMCID： PMC3814392 DOI： 10.1093/ilar/ilt048

Source DB: PubMed Journal: ILAR J ISSN： 1084-2020

108 in total

1. Recent de novo origin of human protein-coding genes.

Authors: David G Knowles; Aoife McLysaght
Journal: Genome Res Date: 2009-09-02 Impact factor: 9.043

2. Epilogue: a personal account of the origins of a new paradigm.

Authors: M Goodman
Journal: Mol Phylogenet Evol Date: 1996-02 Impact factor: 4.286

3. Rates of divergence in gene expression profiles of primates, mice, and flies: stabilizing selection and variability among functional categories.

Authors: Bernardo Lemos; Colin D Meiklejohn; Mario Cáceres; Daniel L Hartl
Journal: Evolution Date: 2005-01 Impact factor: 3.694

4. Linkage disequilibrium extends across putative selected sites in FOXP2.

Authors: Susan E Ptak; Wolfgang Enard; Victor Wiebe; Ines Hellmann; Johannes Krause; Michael Lachmann; Svante Pääbo
Journal: Mol Biol Evol Date: 2009-07-16 Impact factor: 16.240

5. Estimation of hominoid ancestral population sizes under bayesian coalescent models incorporating mutation rate variation and sequencing errors.

Authors: Ralph Burgess; Ziheng Yang
Journal: Mol Biol Evol Date: 2008-07-04 Impact factor: 16.240

6. Myosin gene mutation correlates with anatomical changes in the human lineage.

Authors: Hansell H Stedman; Benjamin W Kozyak; Anthony Nelson; Danielle M Thesier; Leonard T Su; David W Low; Charles R Bridges; Joseph B Shrager; Nancy Minugh-Purvis; Marilyn A Mitchell
Journal: Nature Date: 2004-03-25 Impact factor: 49.962

7. Low nucleotide diversity in man.

Authors: W H Li; L A Sadler
Journal: Genetics Date: 1991-10 Impact factor: 4.562

8. Forces shaping the fastest evolving regions in the human genome.

Authors: Katherine S Pollard; Sofie R Salama; Bryan King; Andrew D Kern; Tim Dreszer; Sol Katzman; Adam Siepel; Jakob S Pedersen; Gill Bejerano; Robert Baertsch; Kate R Rosenbloom; Jim Kent; David Haussler
Journal: PLoS Genet Date: 2006-08-23 Impact factor: 5.917

9. Great ape genetic diversity and population history.

Authors: Javier Prado-Martinez; Peter H Sudmant; Jeffrey M Kidd; Heng Li; Joanna L Kelley; Belen Lorente-Galdos; Krishna R Veeramah; August E Woerner; Timothy D O'Connor; Gabriel Santpere; Alexander Cagan; Christoph Theunert; Ferran Casals; Hafid Laayouni; Kasper Munch; Asger Hobolth; Anders E Halager; Maika Malig; Jessica Hernandez-Rodriguez; Irene Hernando-Herraez; Kay Prüfer; Marc Pybus; Laurel Johnstone; Michael Lachmann; Can Alkan; Dorina Twigg; Natalia Petit; Carl Baker; Fereydoun Hormozdiari; Marcos Fernandez-Callejo; Marc Dabad; Michael L Wilson; Laurie Stevison; Cristina Camprubí; Tiago Carvalho; Aurora Ruiz-Herrera; Laura Vives; Marta Mele; Teresa Abello; Ivanela Kondova; Ronald E Bontrop; Anne Pusey; Felix Lankester; John A Kiyang; Richard A Bergl; Elizabeth Lonsdorf; Simon Myers; Mario Ventura; Pascal Gagneux; David Comas; Hans Siegismund; Julie Blanc; Lidia Agueda-Calpena; Marta Gut; Lucinda Fulton; Sarah A Tishkoff; James C Mullikin; Richard K Wilson; Ivo G Gut; Mary Katherine Gonder; Oliver A Ryder; Beatrice H Hahn; Arcadi Navarro; Joshua M Akey; Jaume Bertranpetit; David Reich; Thomas Mailund; Mikkel H Schierup; Christina Hvilsom; Aida M Andrés; Jeffrey D Wall; Carlos D Bustamante; Michael F Hammer; Evan E Eichler; Tomas Marques-Bonet
Journal: Nature Date: 2013-07-03 Impact factor: 49.962

Great ape genomics.

1. Recent de novo origin of human protein-coding genes.

2. Epilogue: a personal account of the origins of a new paradigm.

3. Rates of divergence in gene expression profiles of primates, mice, and flies: stabilizing selection and variability among functional categories.

4. Linkage disequilibrium extends across putative selected sites in FOXP2.

5. Estimation of hominoid ancestral population sizes under bayesian coalescent models incorporating mutation rate variation and sequencing errors.

6. Myosin gene mutation correlates with anatomical changes in the human lineage.

7. Low nucleotide diversity in man.

8. Forces shaping the fastest evolving regions in the human genome.

9. Great ape genetic diversity and population history.

10. Absence of the TAP2 human recombination hotspot in chimpanzees.

1. Progress in genetics and genomics of nonhuman primates. Introduction.

2. De novo assembly of the chimpanzee transcriptome from NextGen mRNA sequences.

3. One pedigree we all may have come from - did Adam and Eve have the chromosome 2 fusion?

4. Possible Signatures of Hominin Hybridization from the Early Holocene of Southwest China.

5. Epigenomic differences in the human and chimpanzee genomes are associated with structural variation.