Literature DB >> 22986619

Self-priming compartmentalization digital LAMP for point-of-care.

Qiangyuan Zhu1, Yibo Gao, Bingwen Yu, Hao Ren, Lin Qiu, Sihai Han, Wei Jin, Qinhan Jin, Ying Mu.   

Abstract

Digital nucleic acid amplification provides unprecedented opportunities for absolute nucleic acid quantification by counting of single molecules. This technique is useful for molecular genetic analysis in cancer, stem cell, bacterial, non-invasive prenatal diagnosis in which many biologists are interested. This paper describes a self-priming compartmentalization (SPC) microfluidic chip platform for performing digital loop-mediated amplification (LAMP). The energy for the pumping is pre-stored in the degassed bulk PDMS by exploiting the high gas solubility of PDMS; therefore, no additional structures other than channels and reservoirs are required. The sample and oil are sequentially sucked into the channels, and the pressure difference of gas dissolved in PDMS allows sample self-compartmentalization without the need for further chip manipulation such as with pneumatic microvalves and control systems, and so on. The SPC digital LAMP chip can be used like a 384-well plate, so, the world-to-chip fluidic interconnections are avoided. The microfluidic chip contains 4 separate panels, each panel contains 1200 independent 6 nL chambers and can be used to detect 4 samples simultaneously. Digital LAMP on the microfluidic chip was tested quantitatively by using β-actin DNA from humans. The self-priming compartmentalization behavior is roughly predictable using a two-dimensional model. The uniformity of compartmentalization was analyzed by fluorescent intensity and fraction of volume. The results showed that the feasibility and flexibility of the microfluidic chip platform for amplifying single nucleic acid molecules in different chambers made by diluting and distributing sample solutions. The SPC chip has the potential to meet the requirements of a general laboratory: power-free, valve-free, operating at isothermal temperature, inexpensive, sensitive, economizing labour time and reagents. The disposable analytical devices with appropriate air-tight packaging should be useful for point-of-care, and enabling it to become one of the common tools for biology research, especially, in point-of-care testing.

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Year:  2012        PMID: 22986619     DOI: 10.1039/c2lc40774d

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   6.799


  30 in total

1.  Large Fragment of DNA Polymerase I from Geobacillus sp. 777: Cloning and Comparison with DNA Polymerases I in Practical Applications.

Authors:  Igor P Oscorbin; Ulyana A Boyarskikh; Maksim L Filipenko
Journal:  Mol Biotechnol       Date:  2015-10       Impact factor: 2.695

2.  Single cell digital polymerase chain reaction on self-priming compartmentalization chip.

Authors:  Qiangyuan Zhu; Lin Qiu; Yanan Xu; Guang Li; Ying Mu
Journal:  Biomicrofluidics       Date:  2017-01-31       Impact factor: 2.800

3.  Emerging Loop-Mediated Isothermal Amplification-Based Microchip and Microdevice Technologies for Nucleic Acid Detection.

Authors:  Mohammadali Safavieh; Manoj K Kanakasabapathy; Farhang Tarlan; Minhaz U Ahmed; Mohammed Zourob; Waseem Asghar; Hadi Shafiee
Journal:  ACS Biomater Sci Eng       Date:  2016-01-21

4.  Self-digitization chip for quantitative detection of human papillomavirus gene using digital LAMP.

Authors:  Jason E Kreutz; Jiasi Wang; Allison M Sheen; Alison M Thompson; Jeannette P Staheli; Michael R Dyen; Qinghua Feng; Daniel T Chiu
Journal:  Lab Chip       Date:  2019-03-13       Impact factor: 6.799

5.  Multiplex detection of blood-borne pathogens on a self-driven microfluidic chip using loop-mediated isothermal amplification.

Authors:  Chunmei Xie; Shan Chen; Likun Zhang; Xiangpeng He; Yi Ma; Haiping Wu; Bingjie Zou; Guohua Zhou
Journal:  Anal Bioanal Chem       Date:  2021-03-13       Impact factor: 4.142

6.  High aspect ratio induced spontaneous generation of monodisperse picolitre droplets for digital PCR.

Authors:  Xiaonan Xu; Haojun Yuan; Ruyuan Song; Miao Yu; Ho Yin Chung; Youmin Hou; Yuhe Shang; Hongbo Zhou; Shuhuai Yao
Journal:  Biomicrofluidics       Date:  2018-01-02       Impact factor: 2.800

7.  Enhanced sample filling and discretization in thermoplastic 2D microwell arrays using asymmetric contact angles.

Authors:  S Padmanabhan; J Y Han; I Nanayankkara; K Tran; P Ho; N Mesfin; I White; D L DeVoe
Journal:  Biomicrofluidics       Date:  2020-02-18       Impact factor: 2.800

8.  Microfluidic continuous flow digital loop-mediated isothermal amplification (LAMP).

Authors:  Tushar D Rane; Liben Chen; Helena C Zec; Tza-Huei Wang
Journal:  Lab Chip       Date:  2015-02-07       Impact factor: 6.799

9.  Mechanistic evaluation of the pros and cons of digital RT-LAMP for HIV-1 viral load quantification on a microfluidic device and improved efficiency via a two-step digital protocol.

Authors:  Bing Sun; Feng Shen; Stephanie E McCalla; Jason E Kreutz; Mikhail A Karymov; Rustem F Ismagilov
Journal:  Anal Chem       Date:  2013-01-16       Impact factor: 6.986

10.  Increased robustness of single-molecule counting with microfluidics, digital isothermal amplification, and a mobile phone versus real-time kinetic measurements.

Authors:  David A Selck; Mikhail A Karymov; Bing Sun; Rustem F Ismagilov
Journal:  Anal Chem       Date:  2013-11-07       Impact factor: 6.986

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