Literature DB >> 30734822

Self-digitization chip for quantitative detection of human papillomavirus gene using digital LAMP.

Jason E Kreutz1, Jiasi Wang, Allison M Sheen, Alison M Thompson, Jeannette P Staheli, Michael R Dyen, Qinghua Feng, Daniel T Chiu.   

Abstract

Digital nucleic acid amplification and detection methods provide excellent sensitivity and specificity and allow absolute quantification of target nucleic acids. Isothermal methods such as digital loop-mediated isothermal amplification (digital LAMP) have potential for use in rapid disease diagnosis in low-resource settings due to their speed and lack of thermal cycling. We previously developed a self-digitization (SD) chip, a simple microfluidics device that automatically digitizes a sample into an array of nanoliter wells, for use in digital LAMP. In this work, we improve the SD chip design to increase sample loading efficiency, speed, and completeness, and test a range of well volumes and numbers. We demonstrate the diagnostic capability of this platform by applying it to quantifying human papillomavirus 18 gene.

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Year:  2019        PMID: 30734822      PMCID: PMC6420227          DOI: 10.1039/c8lc01223g

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   6.799


  34 in total

1.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  Loop-mediated isothermal amplification reaction using a nondenatured template.

Authors:  K Nagamine; K Watanabe; K Ohtsuka; T Hase; T Notomi
Journal:  Clin Chem       Date:  2001-09       Impact factor: 8.327

3.  Human papillomavirus and survival of patients with oropharyngeal cancer.

Authors:  K Kian Ang; Jonathan Harris; Richard Wheeler; Randal Weber; David I Rosenthal; Phuc Felix Nguyen-Tân; William H Westra; Christine H Chung; Richard C Jordan; Charles Lu; Harold Kim; Rita Axelrod; C Craig Silverman; Kevin P Redmond; Maura L Gillison
Journal:  N Engl J Med       Date:  2010-06-07       Impact factor: 91.245

4.  High-throughput microfluidic single-cell digital polymerase chain reaction.

Authors:  A K White; K A Heyries; C Doolin; M Vaninsberghe; C L Hansen
Journal:  Anal Chem       Date:  2013-07-24       Impact factor: 6.986

5.  A digital microfluidic platform for the automation of quantitative biomolecular assays.

Authors:  Erik C Jensen; Bharath P Bhat; Richard A Mathies
Journal:  Lab Chip       Date:  2009-12-23       Impact factor: 6.799

6.  A rapid and economical method for profiling feature heights during microfabrication.

Authors:  Gloria S Yen; Bryant S Fujimoto; Thomas Schneider; Desmond T K Huynh; Gavin D M Jeffries; Daniel T Chiu
Journal:  Lab Chip       Date:  2011-01-13       Impact factor: 6.799

7.  Megapixel digital PCR.

Authors:  Kevin A Heyries; Carolina Tropini; Michael Vaninsberghe; Callum Doolin; Oleh I Petriv; Anupam Singhal; Kaston Leung; Curtis B Hughesman; Carl L Hansen
Journal:  Nat Methods       Date:  2011-07-03       Impact factor: 28.547

8.  PCR Technologies for Point of Care Testing: Progress and Perspectives.

Authors:  Salvatore Petralia; Sabrina Conoci
Journal:  ACS Sens       Date:  2017-07-18       Impact factor: 7.711

9.  Survival and human papillomavirus in oropharynx cancer in TAX 324: a subset analysis from an international phase III trial.

Authors:  M R Posner; J H Lorch; O Goloubeva; M Tan; L M Schumaker; N J Sarlis; R I Haddad; K J Cullen
Journal:  Ann Oncol       Date:  2011-02-11       Impact factor: 32.976

10.  Self-digitization of samples into a high-density microfluidic bottom-well array.

Authors:  Thomas Schneider; Gloria S Yen; Alison M Thompson; Daniel R Burnham; Daniel T Chiu
Journal:  Anal Chem       Date:  2013-10-07       Impact factor: 6.986

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  8 in total

1.  Enhanced sample filling and discretization in thermoplastic 2D microwell arrays using asymmetric contact angles.

Authors:  S Padmanabhan; J Y Han; I Nanayankkara; K Tran; P Ho; N Mesfin; I White; D L DeVoe
Journal:  Biomicrofluidics       Date:  2020-02-18       Impact factor: 2.800

Review 2.  Precision Medicine in Low- and Middle-Income Countries.

Authors:  Jerald P Radich; Edward Briercheck; Daniel T Chiu; Manoj P Menon; Olga Sala Torra; Cecilia C S Yeung; Edus H Warren
Journal:  Annu Rev Pathol       Date:  2022-01-24       Impact factor: 32.350

Review 3.  Integrated microfluidic systems with sample preparation and nucleic acid amplification.

Authors:  Juxin Yin; Yuanjie Suo; Zheyu Zou; Jingjing Sun; Shan Zhang; Beng Wang; Yawei Xu; Diane Darland; Julia Xiaojun Zhao; Ying Mu
Journal:  Lab Chip       Date:  2019-07-31       Impact factor: 6.799

4.  Detection of 14 High-Risk Human Papillomaviruses Using Digital LAMP Assays on a Self-Digitization Chip.

Authors:  Jiasi Wang; Jeannette P Staheli; Andrew Wu; Jason E Kreutz; Qiongzheng Hu; Jingang Wang; Thomas Schneider; Bryant S Fujimoto; Yuling Qin; Gloria S Yen; Bob Weng; Kara Shibley; Halia Haynes; Rachel L Winer; Qinghua Feng; Daniel T Chiu
Journal:  Anal Chem       Date:  2021-02-03       Impact factor: 6.986

5.  Rapid Detection of Virus Nucleic Acid via Isothermal Amplification on Plasmonic Enhanced Digitizing Biosensor.

Authors:  Shih-Chung Wei; Chia-Chen Chang; Tsung-Liang Chuang; Kung-Bin Sung; Chii-Wann Lin
Journal:  Biosensors (Basel)       Date:  2022-01-28

6.  A loop-mediated isothermal amplification (LAMP) assay to identify isotype 1 β-tubulin locus SNPs in synthetic double-stranded Haemonchus contortus DNA.

Authors:  Livio M Costa-Junior; Umer N Chaudhry; Philip J Skuce; Seamus Stack; Neil D Sargison
Journal:  J Parasit Dis       Date:  2021-07-05

7.  Droplet microfluidic-based loop-mediated isothermal amplification (dLAMP) for simultaneous quantification of multiple targets.

Authors:  Ya-Ling Tan; Tao Wang; Jianjun He; Jian-Hui Jiang
Journal:  STAR Protoc       Date:  2022-04-18

8.  An LED-Driven AuNPs-PDMS Microfluidic Chip and Integrated Device for the Detection of Digital Loop-Mediated Isothermal DNA Amplification.

Authors:  Zengming Zhang; Shuhao Zhao; Fei Hu; Guangpu Yang; Juan Li; Hui Tian; Niancai Peng
Journal:  Micromachines (Basel)       Date:  2020-02-08       Impact factor: 2.891

  8 in total

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