Literature DB >> 22951836

Evolutionary conservation of the PA-X open reading frame in segment 3 of influenza A virus.

Mang Shi1, Brett W Jagger, Helen M Wise, Paul Digard, Edward C Holmes, Jeffery K Taubenberger.   

Abstract

PA-X is a fusion protein of influenza A virus encoded in part from a +1 frameshifted X open reading frame (X-ORF) in segment 3. We show that the X-ORFs of diverse influenza A viruses can be divided into two groups that differ in selection pressure and likely function, reflected in the presence of an internal stop codon and a change in synonymous diversity. Notably, truncated forms of PA-X evolved convergently in swine and dogs, suggesting a strong species-specific effect.

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Year:  2012        PMID： 22951836      PMCID： PMC3486490          DOI： 10.1128/JVI.01677-12

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  10 in total

1.  Comment on "Large-scale sequence analysis of avian influenza isolates".

Authors:  Edward C Holmes; David J Lipman; Dmitriy Zamarin; Jonathan W Yewdell
Journal:  Science       Date:  2006-09-15       Impact factor: 47.728

2.  PAML 4: phylogenetic analysis by maximum likelihood.

Authors:  Ziheng Yang
Journal:  Mol Biol Evol       Date:  2007-05-04       Impact factor: 16.240

3.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

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Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

4.  Crystal structure of the polymerase PA(C)-PB1(N) complex from an avian influenza H5N1 virus.

Authors:  Xiaojing He; Jie Zhou; Mark Bartlam; Rongguang Zhang; Jianyuan Ma; Zhiyong Lou; Xuemei Li; Jingjing Li; Andrzej Joachimiak; Zonghao Zeng; Ruowen Ge; Zihe Rao; Yingfang Liu
Journal:  Nature       Date:  2008-07-09       Impact factor: 49.962

5.  Antigenic and genetic characteristics of swine-origin 2009 A(H1N1) influenza viruses circulating in humans.

Authors:  Rebecca J Garten; C Todd Davis; Colin A Russell; Bo Shu; Stephen Lindstrom; Amanda Balish; Wendy M Sessions; Xiyan Xu; Eugene Skepner; Varough Deyde; Margaret Okomo-Adhiambo; Larisa Gubareva; John Barnes; Catherine B Smith; Shannon L Emery; Michael J Hillman; Pierre Rivailler; James Smagala; Miranda de Graaf; David F Burke; Ron A M Fouchier; Claudia Pappas; Celia M Alpuche-Aranda; Hugo López-Gatell; Hiram Olivera; Irma López; Christopher A Myers; Dennis Faix; Patrick J Blair; Cindy Yu; Kimberly M Keene; P David Dotson; David Boxrud; Anthony R Sambol; Syed H Abid; Kirsten St George; Tammy Bannerman; Amanda L Moore; David J Stringer; Patricia Blevins; Gail J Demmler-Harrison; Michele Ginsberg; Paula Kriner; Steve Waterman; Sandra Smole; Hugo F Guevara; Edward A Belongia; Patricia A Clark; Sara T Beatrice; Ruben Donis; Jacqueline Katz; Lyn Finelli; Carolyn B Bridges; Michael Shaw; Daniel B Jernigan; Timothy M Uyeki; Derek J Smith; Alexander I Klimov; Nancy J Cox
Journal:  Science       Date:  2009-05-22       Impact factor: 47.728

6.  The cap-snatching endonuclease of influenza virus polymerase resides in the PA subunit.

Authors:  Alexandre Dias; Denis Bouvier; Thibaut Crépin; Andrew A McCarthy; Darren J Hart; Florence Baudin; Stephen Cusack; Rob W H Ruigrok
Journal:  Nature       Date:  2009-02-04       Impact factor: 49.962

7.  Crystal structure of an avian influenza polymerase PA(N) reveals an endonuclease active site.

Authors:  Puwei Yuan; Mark Bartlam; Zhiyong Lou; Shoudeng Chen; Jie Zhou; Xiaojing He; Zongyang Lv; Ruowen Ge; Xuemei Li; Tao Deng; Ervin Fodor; Zihe Rao; Yingfang Liu
Journal:  Nature       Date:  2009-02-04       Impact factor: 49.962

8.  Codon conservation in the influenza A virus genome defines RNA packaging signals.

Authors:  Julia R Gog; Emmanuel Dos Santos Afonso; Rosa M Dalton; India Leclercq; Laurence Tiley; Debra Elton; Johann C von Kirchbach; Nadia Naffakh; Nicolas Escriou; Paul Digard
Journal:  Nucleic Acids Res       Date:  2007-03-01       Impact factor: 16.971

9.  A method for the simultaneous estimation of selection intensities in overlapping genes.

Authors:  Niv Sabath; Giddy Landan; Dan Graur
Journal:  PLoS One       Date:  2008-12-22       Impact factor: 3.240

10.  An overlapping protein-coding region in influenza A virus segment 3 modulates the host response.

Authors:  B W Jagger; H M Wise; J C Kash; K-A Walters; N M Wills; Y-L Xiao; R L Dunfee; L M Schwartzman; A Ozinsky; G L Bell; R M Dalton; A Lo; S Efstathiou; J F Atkins; A E Firth; J K Taubenberger; P Digard
Journal:  Science       Date:  2012-06-28       Impact factor: 47.728
  10 in total
  57 in total

1.  Impacts of different expressions of PA-X protein on 2009 pandemic H1N1 virus replication, pathogenicity and host immune responses.

Authors:  Jinhwa Lee; Hai Yu; Yonghai Li; Jingjiao Ma; Yuekun Lang; Michael Duff; Jamie Henningson; Qinfang Liu; Yuhao Li; Abdou Nagy; Bhupinder Bawa; Zejun Li; Guangzhi Tong; Juergen A Richt; Wenjun Ma
Journal:  Virology       Date:  2017-01-29       Impact factor: 3.616

2.  An R195K Mutation in the PA-X Protein Increases the Virulence and Transmission of Influenza A Virus in Mammalian Hosts.

Authors:  Yipeng Sun; Zhe Hu; Xuxiao Zhang; Mingyue Chen; Zhen Wang; Guanlong Xu; Yuhai Bi; Qi Tong; Mingyang Wang; Honglei Sun; Juan Pu; Munir Iqbal; Jinhua Liu
Journal:  J Virol       Date:  2020-05-18       Impact factor: 5.103

3.  Mapping of a Region of the PA-X Protein of Influenza A Virus That Is Important for Its Shutoff Activity.

Authors:  Kohei Oishi; Seiya Yamayoshi; Yoshihiro Kawaoka
Journal:  J Virol       Date:  2015-06-03       Impact factor: 5.103

4.  Influenza A Virus Protein PA-X Contributes to Viral Growth and Suppression of the Host Antiviral and Immune Responses.

Authors:  Tsuyoshi Hayashi; Leslie A MacDonald; Toru Takimoto
Journal:  J Virol       Date:  2015-04-08       Impact factor: 5.103

5.  The RNA-dependent RNA polymerase of the influenza A virus.

Authors:  Thomas M Stubbs; Aartjan Jw Te Velthuis
Journal:  Future Virol       Date:  2014-09       Impact factor: 1.831

Review 6.  Determinants of virulence of influenza A virus.

Authors:  E J A Schrauwen; M de Graaf; S Herfst; G F Rimmelzwaan; A D M E Osterhaus; R A M Fouchier
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2013-09-29       Impact factor: 3.267

7.  The novel influenza A virus protein PA-X and its naturally deleted variant show different enzymatic properties in comparison to the viral endonuclease PA.

Authors:  Laura Bavagnoli; Stefano Cucuzza; Giulia Campanini; Francesca Rovida; Stefania Paolucci; Fausto Baldanti; Giovanni Maga
Journal:  Nucleic Acids Res       Date:  2015-09-17       Impact factor: 16.971

8.  Truncation of PA-X Contributes to Virulence and Transmission of H3N8 and H3N2 Canine Influenza Viruses in Dogs.

Authors:  Litao Liu; Shikai Song; Ye Shen; Chao Ma; Tong Wang; Qi Tong; Honglei Sun; Juan Pu; Munir Iqbal; Jinhua Liu; Yipeng Sun
Journal:  J Virol       Date:  2020-07-16       Impact factor: 5.103

9.  Swine Influenza Virus PA and Neuraminidase Gene Reassortment into Human H1N1 Influenza Virus Is Associated with an Altered Pathogenic Phenotype Linked to Increased MIP-2 Expression.

Authors:  Daniel Dlugolenski; Les Jones; Elizabeth Howerth; David Wentworth; S Mark Tompkins; Ralph A Tripp
Journal:  J Virol       Date:  2015-03-11       Impact factor: 5.103

10.  Nucleotide sequence of Zygosaccharomyces bailii virus Z: Evidence for +1 programmed ribosomal frameshifting and for assignment to family Amalgaviridae.

Authors:  Delphine Depierreux; Minh Vong; Max L Nibert
Journal:  Virus Res       Date:  2016-03-04       Impact factor: 3.303
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