Literature DB >> 16973862

Comment on "Large-scale sequence analysis of avian influenza isolates".

Edward C Holmes1, David J Lipman, Dmitriy Zamarin, Jonathan W Yewdell.   

Abstract

Obenauer et al. (Research Articles, 17 March 2006, p. 1576) reported that the influenza A virus PB1-F2 gene is evolving under strong positive selection, as documented by an extremely high ratio of the number of nonsynonymous nucleotide substitutions to the number of synonymous substitutions (dN/dS). However, we show that this observation is likely to be an artifact related to the location of PB1-F2 in the +1 reading frame of the PB1 gene.

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Year:  2006        PMID： 16973862     DOI： 10.1126/science.1131729

Source DB:  PubMed          Journal:  Science        ISSN： 0036-8075            Impact factor:   47.728


  18 in total

1.  Differential localization and function of PB1-F2 derived from different strains of influenza A virus.

Authors:  Chi-Jene Chen; Guang-Wu Chen; Ching-Ho Wang; Chih-Heng Huang; Yeau-Ching Wang; Shin-Ru Shih
Journal:  J Virol       Date:  2010-07-21       Impact factor: 5.103

2.  Is there a twelfth protein-coding gene in the genome of influenza A? A selection-based approach to the detection of overlapping genes in closely related sequences.

Authors:  Niv Sabath; Jeffrey S Morris; Dan Graur
Journal:  J Mol Evol       Date:  2011-12-21       Impact factor: 2.395

Review 3.  Influenza virus evolution, host adaptation, and pandemic formation.

Authors:  Jeffery K Taubenberger; John C Kash
Journal:  Cell Host Microbe       Date:  2010-06-25       Impact factor: 21.023

4.  Analysis by single-gene reassortment demonstrates that the 1918 influenza virus is functionally compatible with a low-pathogenicity avian influenza virus in mice.

Authors:  Li Qi; A Sally Davis; Brett W Jagger; Louis M Schwartzman; Eleca J Dunham; John C Kash; Jeffery K Taubenberger
Journal:  J Virol       Date:  2012-06-20       Impact factor: 5.103

5.  The Contribution of the PB1-F2 Protein to the Fitness of Influenza A Viruses and its Recent Evolution in the 2009 Influenza A (H1N1) Pandemic Virus.

Authors:  Vladimir Trifonov; Vincent Racaniello; Raul Rabadan
Journal:  PLoS Curr       Date:  2009-08-21

6.  PB1-F2 proteins from H5N1 and 20 century pandemic influenza viruses cause immunopathology.

Authors:  Julie L McAuley; Jerry E Chipuk; Kelli L Boyd; Nick Van De Velde; Douglas R Green; Jonathan A McCullers
Journal:  PLoS Pathog       Date:  2010-07-22       Impact factor: 6.823

7.  Genetic and antigenic evolution of H9N2 avian influenza viruses circulating in Egypt between 2011 and 2013.

Authors:  Ahmed Kandeil; Rabeh El-Shesheny; Asmaa M Maatouq; Yassmin Moatasim; Mahmoud M Shehata; Ola Bagato; Adam Rubrum; Karthik Shanmuganatham; Richard J Webby; Mohamed Ahmed Ali; Ghazi Kayali
Journal:  Arch Virol       Date:  2014-07-03       Impact factor: 2.574

8.  Rapid asymmetric evolution of a dual-coding tumor suppressor INK4a/ARF locus contradicts its function.

Authors:  Radek Szklarczyk; Jaap Heringa; Sergei Kosakovsky Pond; Anton Nekrutenko
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-24       Impact factor: 11.205

9.  A method for the simultaneous estimation of selection intensities in overlapping genes.

Authors:  Niv Sabath; Giddy Landan; Dan Graur
Journal:  PLoS One       Date:  2008-12-22       Impact factor: 3.240

10.  Evolutionary conservation of the PA-X open reading frame in segment 3 of influenza A virus.

Authors:  Mang Shi; Brett W Jagger; Helen M Wise; Paul Digard; Edward C Holmes; Jeffery K Taubenberger
Journal:  J Virol       Date:  2012-09-05       Impact factor: 5.103
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