Literature DB >> 22944281

Gatekeepers of chromatin: Small metabolites elicit big changes in gene expression.

Salma Kaochar1, Benjamin P Tu.   

Abstract

Eukaryotes are constantly fine-tuning their gene expression programs in response to the demands of the environment and the availability of nutrients. Such dynamic regulation of the genome necessitates versatile chromatin architecture. Rapid changes in transcript levels are brought about via a wide range of post-translational modifications of the histone proteins that control chromatin structure. Many enzymes responsible for these modifications have been identified and they require various metabolic cofactors or substrates for their activity. Herein, we highlight recent developments that have begun to reveal particular cellular metabolites that might in fact be underappreciated regulators of gene expression through their ability to modulate particular histone modifications.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22944281      PMCID: PMC3482309          DOI: 10.1016/j.tibs.2012.07.008

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  77 in total

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3.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

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4.  Methionine adenosyltransferase II serves as a transcriptional corepressor of Maf oncoprotein.

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Journal:  Mol Cell       Date:  2011-03-04       Impact factor: 17.970

5.  The TAF(II)250 subunit of TFIID has histone acetyltransferase activity.

Authors:  C A Mizzen; X J Yang; T Kokubo; J E Brownell; A J Bannister; T Owen-Hughes; J Workman; L Wang; S L Berger; T Kouzarides; Y Nakatani; C D Allis
Journal:  Cell       Date:  1996-12-27       Impact factor: 41.582

Review 6.  Sirtuin chemical mechanisms.

Authors:  Anthony A Sauve
Journal:  Biochim Biophys Acta       Date:  2010-02-02

7.  Identification of a gene encoding a yeast histone H4 acetyltransferase.

Authors:  S Kleff; E D Andrulis; C W Anderson; R Sternglanz
Journal:  J Biol Chem       Date:  1995-10-20       Impact factor: 5.157

8.  Substrate specificity and kinetic mechanism of the Sir2 family of NAD+-dependent histone/protein deacetylases.

Authors:  Margie T Borra; Michael R Langer; James T Slama; John M Denu
Journal:  Biochemistry       Date:  2004-08-03       Impact factor: 3.162

9.  Sir2 regulates skeletal muscle differentiation as a potential sensor of the redox state.

Authors:  Marcella Fulco; R Louis Schiltz; Simona Iezzi; M Todd King; Po Zhao; Yoshihiro Kashiwaya; Eric Hoffman; Richard L Veech; Vittorio Sartorelli
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Review 10.  Protein arginine methylation in mammals: who, what, and why.

Authors:  Mark T Bedford; Steven G Clarke
Journal:  Mol Cell       Date:  2009-01-16       Impact factor: 17.970

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  20 in total

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Review 3.  Integrating Proteomics and Targeted Metabolomics to Understand Global Changes in Histone Modifications.

Authors:  Johayra Simithy; Simone Sidoli; Benjamin A Garcia
Journal:  Proteomics       Date:  2018-04-20       Impact factor: 3.984

Review 4.  Connections between metabolism and epigenetics in cancers.

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Journal:  Semin Cancer Biol       Date:  2019-06-08       Impact factor: 15.707

Review 5.  Dietary control of chromatin.

Authors:  Zhiguang Huang; Ling Cai; Benjamin P Tu
Journal:  Curr Opin Cell Biol       Date:  2015-06-19       Impact factor: 8.382

Review 6.  Developmental origins of NAFLD: a womb with a clue.

Authors:  Stephanie R Wesolowski; Karim C El Kasmi; Karen R Jonscher; Jacob E Friedman
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Review 7.  Metabolism and epigenetics: a link cancer cells exploit.

Authors:  Alessandro Carrer; Kathryn E Wellen
Journal:  Curr Opin Biotechnol       Date:  2014-11-29       Impact factor: 9.740

Review 8.  Recent Advances in the Etiopathogenesis of Inflammatory Bowel Disease: The Role of Omics.

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Review 9.  Metabolic Signaling to Chromatin.

Authors:  Shelley L Berger; Paolo Sassone-Corsi
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10.  Conceptualizing Eukaryotic Metabolic Sensing and Signaling.

Authors:  Sunil Laxman
Journal:  J Indian Inst Sci       Date:  2017-03-22
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