Literature DB >> 28900867

Recent Advances in the Etiopathogenesis of Inflammatory Bowel Disease: The Role of Omics.

Eleni Stylianou1.   

Abstract

Omics technology presents an exciting and timely opportunity to improve our understanding of the molecular etiology and pathogenesis of the group of chronic, heterogeneous, inflammatory disorders that comprise inflammatory bowel disease (IBD). Interest in the use of omics in the biomedical and clinical research communities is gaining pace due to its potential to make huge strides in our understanding of IBD causality, and pathology. Omics-related research also has applicability for biomarker discovery and the development of individualized treatments for patients, termed 'precision medicine'. This review will evaluate the omics analyses that have been performed in the context of IBD, with a focus on the significance of multi-omics IBD studies and the bioinformatic integration of omics data. Such an approach has the potential to provide a comprehensive analysis of the major determinants of IBD. The translation of omics data into individualized therapy will also be addressed. Major progress in understanding the changes that underlie inflammatory bowel diseases (IBDs) has been achieved; however, the key molecular changes in IBD that could be targeted for better treatments are undefined. This article reviews the latest IBD research on new high-throughput technologies called 'omics', which are measurements and analyses of large numbers of molecules from patients and healthy subjects. Omics data have the potential to dramatically improve therapy by providing new information to tailor highly specific treatments to individual patients with IBD.

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Year:  2018        PMID: 28900867     DOI: 10.1007/s40291-017-0298-4

Source DB:  PubMed          Journal:  Mol Diagn Ther        ISSN: 1177-1062            Impact factor:   4.074


  131 in total

Review 1.  Metabolic regulation of histone post-translational modifications.

Authors:  Jing Fan; Kimberly A Krautkramer; Jessica L Feldman; John M Denu
Journal:  ACS Chem Biol       Date:  2015-01-16       Impact factor: 5.100

2.  The Role of MicroRNA in Inflammatory Bowel Disease.

Authors:  Sushila R Dalal; John H Kwon
Journal:  Gastroenterol Hepatol (N Y)       Date:  2010-11

3.  Identification of novel predictor classifiers for inflammatory bowel disease by gene expression profiling.

Authors:  Trinidad Montero-Meléndez; Xavier Llor; Esther García-Planella; Mauro Perretti; Antonio Suárez
Journal:  PLoS One       Date:  2013-10-14       Impact factor: 3.240

4.  MicroRNA signatures differentiate Crohn's disease from ulcerative colitis.

Authors:  Jeremy S Schaefer; Taraq Attumi; Antone R Opekun; Bincy Abraham; Jason Hou; Harold Shelby; David Y Graham; Charles Streckfus; John R Klein
Journal:  BMC Immunol       Date:  2015-02-10       Impact factor: 3.615

5.  Two-stage genome-wide methylation profiling in childhood-onset Crohn's Disease implicates epigenetic alterations at the VMP1/MIR21 and HLA loci.

Authors:  Alex T Adams; Nicholas A Kennedy; Richard Hansen; Nicholas T Ventham; Kate R OʼLeary; Hazel E Drummond; Colin L Noble; Emad El-Omar; Richard K Russell; David C Wilson; Elaine R Nimmo; Georgina L Hold; Jack Satsangi
Journal:  Inflamm Bowel Dis       Date:  2014-10       Impact factor: 7.290

6.  A global reference for human genetic variation.

Authors:  Adam Auton; Lisa D Brooks; Richard M Durbin; Erik P Garrison; Hyun Min Kang; Jan O Korbel; Jonathan L Marchini; Shane McCarthy; Gil A McVean; Gonçalo R Abecasis
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

Review 7.  Biomarkers in Search of Precision Medicine in IBD.

Authors:  Ray K Boyapati; Rahul Kalla; Jack Satsangi; Gwo-Tzer Ho
Journal:  Am J Gastroenterol       Date:  2016-09-27       Impact factor: 10.864

8.  Integrative analysis of 111 reference human epigenomes.

Authors:  Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi-Moussavi; Pouya Kheradpour; Zhizhuo Zhang; Jianrong Wang; Michael J Ziller; Viren Amin; John W Whitaker; Matthew D Schultz; Lucas D Ward; Abhishek Sarkar; Gerald Quon; Richard S Sandstrom; Matthew L Eaton; Yi-Chieh Wu; Andreas R Pfenning; Xinchen Wang; Melina Claussnitzer; Yaping Liu; Cristian Coarfa; R Alan Harris; Noam Shoresh; Charles B Epstein; Elizabeta Gjoneska; Danny Leung; Wei Xie; R David Hawkins; Ryan Lister; Chibo Hong; Philippe Gascard; Andrew J Mungall; Richard Moore; Eric Chuah; Angela Tam; Theresa K Canfield; R Scott Hansen; Rajinder Kaul; Peter J Sabo; Mukul S Bansal; Annaick Carles; Jesse R Dixon; Kai-How Farh; Soheil Feizi; Rosa Karlic; Ah-Ram Kim; Ashwinikumar Kulkarni; Daofeng Li; Rebecca Lowdon; GiNell Elliott; Tim R Mercer; Shane J Neph; Vitor Onuchic; Paz Polak; Nisha Rajagopal; Pradipta Ray; Richard C Sallari; Kyle T Siebenthall; Nicholas A Sinnott-Armstrong; Michael Stevens; Robert E Thurman; Jie Wu; Bo Zhang; Xin Zhou; Arthur E Beaudet; Laurie A Boyer; Philip L De Jager; Peggy J Farnham; Susan J Fisher; David Haussler; Steven J M Jones; Wei Li; Marco A Marra; Michael T McManus; Shamil Sunyaev; James A Thomson; Thea D Tlsty; Li-Huei Tsai; Wei Wang; Robert A Waterland; Michael Q Zhang; Lisa H Chadwick; Bradley E Bernstein; Joseph F Costello; Joseph R Ecker; Martin Hirst; Alexander Meissner; Aleksandar Milosavljevic; Bing Ren; John A Stamatoyannopoulos; Ting Wang; Manolis Kellis
Journal:  Nature       Date:  2015-02-19       Impact factor: 69.504

9.  Exploring the genetic architecture of inflammatory bowel disease by whole-genome sequencing identifies association at ADCY7.

Authors:  Yang Luo; Katrina M de Lange; Luke Jostins; Loukas Moutsianas; Joshua Randall; Nicholas A Kennedy; Christopher A Lamb; Shane McCarthy; Tariq Ahmad; Cathryn Edwards; Eva Goncalves Serra; Ailsa Hart; Chris Hawkey; John C Mansfield; Craig Mowat; William G Newman; Sam Nichols; Martin Pollard; Jack Satsangi; Alison Simmons; Mark Tremelling; Holm Uhlig; David C Wilson; James C Lee; Natalie J Prescott; Charlie W Lees; Christopher G Mathew; Miles Parkes; Jeffrey C Barrett; Carl A Anderson
Journal:  Nat Genet       Date:  2017-01-09       Impact factor: 41.307

10.  Systematic meta-analyses and field synopsis of genetic and epigenetic studies in paediatric inflammatory bowel disease.

Authors:  Xue Li; Peige Song; Maria Timofeeva; Xiangrui Meng; Igor Rudan; Julian Little; Jack Satsangi; Harry Campbell; Evropi Theodoratou
Journal:  Sci Rep       Date:  2016-09-27       Impact factor: 4.379

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  2 in total

1.  Influence of Rectal Ozone Application on the Intensity of Free Radical Destruction of Lipids and Intestinal Proteins in the Dynamics of Experimental Colitis.

Authors:  M V Osikov; E V Davydova; N V Kaigorodtseva; A A Fedosov; M A Il'inykh; K S Savchuk; L V Vorgova
Journal:  Bull Exp Biol Med       Date:  2022-05-27       Impact factor: 0.804

2.  Immunological Networks Defining the Heterogeneity of Inflammatory Bowel Diseases.

Authors:  Katja A Selin; Charlotte R H Hedin; Eduardo J Villablanca
Journal:  J Crohns Colitis       Date:  2021-11-08       Impact factor: 9.071

  2 in total

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