Literature DB >> 25461508

Metabolism and epigenetics: a link cancer cells exploit.

Alessandro Carrer1, Kathryn E Wellen2.   

Abstract

Both cellular nutrient metabolism and chromatin organization are remodeled in cancer cells, and these alterations play key roles in tumor development and growth. Many chromatin modifying-enzymes utilize metabolic intermediates as cofactors or substrates, and recent studies have demonstrated that the epigenome is sensitive to cellular metabolism. The contribution of metabolic alterations to epigenetic deregulation in cancer cells is just beginning to emerge, as are the roles of the metabolism-epigenetics link in tumorigenesis. Here we review the roles of acetyl-CoA and S-adenosylmethionine (SAM), donor substrates for acetylation and methylation reactions, respectively, in regulating chromatin modifications in response to nutrient metabolism. We further discuss how oncogenic signaling, cell metabolism, and histone modifications are interconnected and how their relationship might impact tumor growth.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25461508      PMCID: PMC4721608          DOI: 10.1016/j.copbio.2014.11.012

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  52 in total

1.  Phosphorylation of recombinant human ATP:citrate lyase by cAMP-dependent protein kinase abolishes homotropic allosteric regulation of the enzyme by citrate and increases the enzyme activity. Allosteric activation of ATP:citrate lyase by phosphorylated sugars.

Authors:  I A Potapova; M R El-Maghrabi; S V Doronin; W B Benjamin
Journal:  Biochemistry       Date:  2000-02-08       Impact factor: 3.162

2.  Dynamics of histone acetylation in Saccharomyces cerevisiae.

Authors:  J H Waterborg
Journal:  Biochemistry       Date:  2001-02-27       Impact factor: 3.162

3.  A gnotobiotic mouse model demonstrates that dietary fiber protects against colorectal tumorigenesis in a microbiota- and butyrate-dependent manner.

Authors:  Dallas R Donohoe; Darcy Holley; Leonard B Collins; Stephanie A Montgomery; Alan C Whitmore; Andrew Hillhouse; Kaitlin P Curry; Sarah W Renner; Alicia Greenwalt; Elizabeth P Ryan; Virginia Godfrey; Mark T Heise; Deborah S Threadgill; Anna Han; James A Swenberg; David W Threadgill; Scott J Bultman
Journal:  Cancer Discov       Date:  2014-09-29       Impact factor: 39.397

4.  Reductive glutamine metabolism by IDH1 mediates lipogenesis under hypoxia.

Authors:  Christian M Metallo; Paulo A Gameiro; Eric L Bell; Katherine R Mattaini; Juanjuan Yang; Karsten Hiller; Christopher M Jewell; Zachary R Johnson; Darrell J Irvine; Leonard Guarente; Joanne K Kelleher; Matthew G Vander Heiden; Othon Iliopoulos; Gregory Stephanopoulos
Journal:  Nature       Date:  2011-11-20       Impact factor: 49.962

5.  Comparative metabolic flux profiling of melanoma cell lines: beyond the Warburg effect.

Authors:  David A Scott; Adam D Richardson; Fabian V Filipp; Christine A Knutzen; Gary G Chiang; Ze'ev A Ronai; Andrei L Osterman; Jeffrey W Smith
Journal:  J Biol Chem       Date:  2011-10-13       Impact factor: 5.157

6.  c-Myc programs fatty acid metabolism and dictates acetyl-CoA abundance and fate.

Authors:  Lia R Edmunds; Lokendra Sharma; Audry Kang; Jie Lu; Jerry Vockley; Shrabani Basu; Radha Uppala; Eric S Goetzman; Megan E Beck; Donald Scott; Edward V Prochownik
Journal:  J Biol Chem       Date:  2014-07-22       Impact factor: 5.157

Review 7.  Chromatin: a capacitor of acetate for integrated regulation of gene expression and cell physiology.

Authors:  Siavash K Kurdistani
Journal:  Curr Opin Genet Dev       Date:  2014-07-10       Impact factor: 5.578

Review 8.  HIF1α and HIF2α: sibling rivalry in hypoxic tumour growth and progression.

Authors:  Brian Keith; Randall S Johnson; M Celeste Simon
Journal:  Nat Rev Cancer       Date:  2011-12-15       Impact factor: 60.716

9.  Hypoxia promotes isocitrate dehydrogenase-dependent carboxylation of α-ketoglutarate to citrate to support cell growth and viability.

Authors:  David R Wise; Patrick S Ward; Jessica E S Shay; Justin R Cross; Joshua J Gruber; Uma M Sachdeva; Jesse M Platt; Raymond G DeMatteo; M Celeste Simon; Craig B Thompson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-21       Impact factor: 12.779

10.  Functional genomics reveal that the serine synthesis pathway is essential in breast cancer.

Authors:  Richard Possemato; Kevin M Marks; Yoav D Shaul; Michael E Pacold; Dohoon Kim; Kıvanç Birsoy; Shalini Sethumadhavan; Hin-Koon Woo; Hyun G Jang; Abhishek K Jha; Walter W Chen; Francesca G Barrett; Nicolas Stransky; Zhi-Yang Tsun; Glenn S Cowley; Jordi Barretina; Nada Y Kalaany; Peggy P Hsu; Kathleen Ottina; Albert M Chan; Bingbing Yuan; Levi A Garraway; David E Root; Mari Mino-Kenudson; Elena F Brachtel; Edward M Driggers; David M Sabatini
Journal:  Nature       Date:  2011-08-18       Impact factor: 49.962

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  38 in total

1.  Should we consider subcellular compartmentalization of metabolites, and if so, how do we measure them?

Authors:  Kathryn E Wellen; Nathaniel W Snyder
Journal:  Curr Opin Clin Nutr Metab Care       Date:  2019-09       Impact factor: 4.294

2.  Tungsten exposure causes a selective loss of histone demethylase protein.

Authors:  Freda Laulicht-Glick; Feng Wu; Xiaoru Zhang; Ashley Jordan; Jason Brocato; Thomas Kluz; Hong Sun; Max Costa
Journal:  Mol Carcinog       Date:  2017-03-30       Impact factor: 4.784

3.  Impact of a High-fat Diet on Tissue Acyl-CoA and Histone Acetylation Levels.

Authors:  Alessandro Carrer; Joshua L D Parris; Sophie Trefely; Ryan A Henry; David C Montgomery; AnnMarie Torres; John M Viola; Yin-Ming Kuo; Ian A Blair; Jordan L Meier; Andrew J Andrews; Nathaniel W Snyder; Kathryn E Wellen
Journal:  J Biol Chem       Date:  2017-01-11       Impact factor: 5.157

Review 4.  Spatiotemporal Control of Acetyl-CoA Metabolism in Chromatin Regulation.

Authors:  Sharanya Sivanand; Isabella Viney; Kathryn E Wellen
Journal:  Trends Biochem Sci       Date:  2017-11-23       Impact factor: 13.807

Review 5.  Integrating Proteomics and Targeted Metabolomics to Understand Global Changes in Histone Modifications.

Authors:  Johayra Simithy; Simone Sidoli; Benjamin A Garcia
Journal:  Proteomics       Date:  2018-04-20       Impact factor: 3.984

Review 6.  The evolving metabolic landscape of chromatin biology and epigenetics.

Authors:  Ziwei Dai; Vijyendra Ramesh; Jason W Locasale
Journal:  Nat Rev Genet       Date:  2020-09-09       Impact factor: 53.242

7.  Arginase 2 Suppresses Renal Carcinoma Progression via Biosynthetic Cofactor Pyridoxal Phosphate Depletion and Increased Polyamine Toxicity.

Authors:  Joshua D Ochocki; Sanika Khare; Markus Hess; Daniel Ackerman; Bo Qiu; Jennie I Daisak; Andrew J Worth; Nan Lin; Pearl Lee; Hong Xie; Bo Li; Bradley Wubbenhorst; Tobi G Maguire; Katherine L Nathanson; James C Alwine; Ian A Blair; Itzhak Nissim; Brian Keith; M Celeste Simon
Journal:  Cell Metab       Date:  2018-05-10       Impact factor: 27.287

8.  Understanding tumor anabolism and patient catabolism in cancer-associated cachexia.

Authors:  Alejandro Schcolnik-Cabrera; Alma Chávez-Blanco; Guadalupe Domínguez-Gómez; Alfonso Dueñas-González
Journal:  Am J Cancer Res       Date:  2017-05-01       Impact factor: 6.166

Review 9.  Metabolic interactions with cancer epigenetics.

Authors:  Xia Gao; Michael A Reid; Mei Kong; Jason W Locasale
Journal:  Mol Aspects Med       Date:  2016-09-09

10.  Metabolic Diseases Downregulate the Majority of Histone Modification Enzymes, Making a Few Upregulated Enzymes Novel Therapeutic Targets--"Sand Out and Gold Stays".

Authors:  Ying Shao; Valeria Chernaya; Candice Johnson; William Y Yang; Ramon Cueto; Xiaojin Sha; Yi Zhang; Xuebin Qin; Jianxin Sun; Eric T Choi; Hong Wang; Xiao-feng Yang
Journal:  J Cardiovasc Transl Res       Date:  2016-01-08       Impact factor: 4.132

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