Literature DB >> 26094239

Dietary control of chromatin.

Zhiguang Huang1, Ling Cai2, Benjamin P Tu3.   

Abstract

Organisms must be able to rapidly alter gene expression in response to changes in their nutrient environment. This review summarizes evidence that epigenetic modifications of chromatin depend on particular metabolites of intermediary metabolism, enabling the facile regulation of gene expression in tune with metabolic state. Nutritional or dietary control of chromatin is an often-overlooked, yet fundamental regulatory mechanism directly linked to human physiology. Nutrient-sensitive epigenetic marks are dynamic, suggesting rapid turnover, and may have functions beyond the regulation of gene transcription, including pH regulation and as carbon sources in cancer cells.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26094239      PMCID: PMC4597913          DOI: 10.1016/j.ceb.2015.05.004

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  62 in total

1.  Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression.

Authors:  Brian D Strahl; Patrick A Grant; Scott D Briggs; Zu-Wen Sun; James R Bone; Jennifer A Caldwell; Sahana Mollah; Richard G Cook; Jeffrey Shabanowitz; Donald F Hunt; C David Allis
Journal:  Mol Cell Biol       Date:  2002-03       Impact factor: 4.272

Review 2.  Histone methylation: dynamic or static?

Authors:  Andrew J Bannister; Robert Schneider; Tony Kouzarides
Journal:  Cell       Date:  2002-06-28       Impact factor: 41.582

Review 3.  Dynamics of histone acetylation in vivo. A function for acetylation turnover?

Authors:  Jakob H Waterborg
Journal:  Biochem Cell Biol       Date:  2002       Impact factor: 3.626

Review 4.  Function and information content of DNA methylation.

Authors:  Dirk Schübeler
Journal:  Nature       Date:  2015-01-15       Impact factor: 49.962

5.  Methionine adenosyltransferase II serves as a transcriptional corepressor of Maf oncoprotein.

Authors:  Yasutake Katoh; Tsuyoshi Ikura; Yutaka Hoshikawa; Satoshi Tashiro; Takashi Ito; Mineto Ohta; Yohei Kera; Tetsuo Noda; Kazuhiko Igarashi
Journal:  Mol Cell       Date:  2011-03-04       Impact factor: 17.970

6.  Modulating acetyl-CoA binding in the GCN5 family of histone acetyltransferases.

Authors:  Michael R Langer; Christopher J Fry; Craig L Peterson; John M Denu
Journal:  J Biol Chem       Date:  2002-05-06       Impact factor: 5.157

7.  DNA methyltransferase 3a regulates osteoclast differentiation by coupling to an S-adenosylmethionine-producing metabolic pathway.

Authors:  Keizo Nishikawa; Yoriko Iwamoto; Yasuhiro Kobayashi; Fumiki Katsuoka; Shin-ichi Kawaguchi; Tadayuki Tsujita; Takashi Nakamura; Shigeaki Kato; Masayuki Yamamoto; Hiroshi Takayanagi; Masaru Ishii
Journal:  Nat Med       Date:  2015-02-23       Impact factor: 53.440

8.  Changing the selectivity of p300 by acetyl-CoA modulation of histone acetylation.

Authors:  Ryan A Henry; Yin-Ming Kuo; Vikram Bhattacharjee; Timothy J Yen; Andrew J Andrews
Journal:  ACS Chem Biol       Date:  2014-11-06       Impact factor: 5.100

9.  Dot1p modulates silencing in yeast by methylation of the nucleosome core.

Authors:  Fred van Leeuwen; Philip R Gafken; Daniel E Gottschling
Journal:  Cell       Date:  2002-06-14       Impact factor: 41.582

10.  Intracellular α-ketoglutarate maintains the pluripotency of embryonic stem cells.

Authors:  Bryce W Carey; Lydia W S Finley; Justin R Cross; C David Allis; Craig B Thompson
Journal:  Nature       Date:  2014-12-10       Impact factor: 49.962

View more
  10 in total

1.  Different Effects of Knockouts in ALDH2 and ACSS2 on Embryonic Stem Cell Differentiation.

Authors:  Ryan N Serio; Changyuan Lu; Steven S Gross; Lorraine J Gudas
Journal:  Alcohol Clin Exp Res       Date:  2019-08-05       Impact factor: 3.455

2.  Demethylation of the Protein Phosphatase PP2A Promotes Demethylation of Histones to Enable Their Function as a Methyl Group Sink.

Authors:  Cunqi Ye; Benjamin M Sutter; Yun Wang; Zheng Kuang; Xiaozheng Zhao; Yonghao Yu; Benjamin P Tu
Journal:  Mol Cell       Date:  2019-02-13       Impact factor: 17.970

Review 3.  Metabolic interactions with cancer epigenetics.

Authors:  Xia Gao; Michael A Reid; Mei Kong; Jason W Locasale
Journal:  Mol Aspects Med       Date:  2016-09-09

Review 4.  Sink into the Epigenome: Histones as Repositories That Influence Cellular Metabolism.

Authors:  Cunqi Ye; Benjamin P Tu
Journal:  Trends Endocrinol Metab       Date:  2018-07-11       Impact factor: 12.015

Review 5.  The impact of cellular metabolism on chromatin dynamics and epigenetics.

Authors:  Michael A Reid; Ziwei Dai; Jason W Locasale
Journal:  Nat Cell Biol       Date:  2017-10-23       Impact factor: 28.824

6.  Functional and regulatory profiling of energy metabolism in fission yeast.

Authors:  Michal Malecki; Danny A Bitton; Maria Rodríguez-López; Charalampos Rallis; Noelia Garcia Calavia; Graeme C Smith; Jürg Bähler
Journal:  Genome Biol       Date:  2016-11-25       Impact factor: 13.583

Review 7.  Hepatitis C Virus as a Unique Human Model Disease to Define Differences in the Transcriptional Landscape of T Cells in Acute versus Chronic Infection.

Authors:  David Wolski; Georg M Lauer
Journal:  Viruses       Date:  2019-07-26       Impact factor: 5.048

8.  Kynurenine, 3-OH-kynurenine, and anthranilate are nutrient metabolites that alter H3K4 trimethylation and H2AS40 O-GlcNAcylation at hypothalamus-related loci.

Authors:  Koji Hayakawa; Kenta Nishitani; Satoshi Tanaka
Journal:  Sci Rep       Date:  2019-12-24       Impact factor: 4.379

Review 9.  Epigenetics and inheritance of phenotype variation in livestock.

Authors:  Kostas A Triantaphyllopoulos; Ioannis Ikonomopoulos; Andrew J Bannister
Journal:  Epigenetics Chromatin       Date:  2016-07-21       Impact factor: 4.954

Review 10.  Deciphering the mechanism by which the yeast Phaffia rhodozyma responds adaptively to environmental, nutritional, and genetic cues.

Authors:  Luis B Flores-Cotera; Cipriano Chávez-Cabrera; Anahi Martínez-Cárdenas; Sergio Sánchez; Oscar Ulises García-Flores
Journal:  J Ind Microbiol Biotechnol       Date:  2021-12-23       Impact factor: 4.258

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.