Literature DB >> 22920184

DNA demethylation by TDG.

Shannon R Dalton1, Alfonso Bellacosa.   

Abstract

DNA methylation has long been considered a very stable DNA modification in mammals that could only be removed by replication in the absence of remethylation - that is, by mere dilution of this epigenetic mark (so-called passive DNA demethylation). However, in recent years, a significant number of studies have revealed the existence of active processes of DNA demethylation in mammals, with important roles in development and transcriptional regulation, allowing the molecular mechanisms of active DNA demethylation to be unraveled. In this article, we review the recent literature highlighting the prominent role played in active DNA demethylation by base excision repair and especially by TDG.

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Year:  2012        PMID: 22920184      PMCID: PMC3600859          DOI: 10.2217/epi.12.36

Source DB:  PubMed          Journal:  Epigenomics        ISSN: 1750-192X            Impact factor:   4.778


  73 in total

1.  Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability.

Authors:  Daniel Cortázar; Christophe Kunz; Jim Selfridge; Teresa Lettieri; Yusuke Saito; Eilidh MacDougall; Annika Wirz; David Schuermann; Angelika L Jacobs; Fredy Siegrist; Roland Steinacher; Josef Jiricny; Adrian Bird; Primo Schär
Journal:  Nature       Date:  2011-01-30       Impact factor: 49.962

Review 2.  Unraveling the molecular pathophysiology of myelodysplastic syndromes.

Authors:  Rafael Bejar; Ross Levine; Benjamin L Ebert
Journal:  J Clin Oncol       Date:  2011-01-10       Impact factor: 44.544

3.  Characterization of Dnmt3b:thymine-DNA glycosylase interaction and stimulation of thymine glycosylase-mediated repair by DNA methyltransferase(s) and RNA.

Authors:  Michael J Boland; Judith K Christman
Journal:  J Mol Biol       Date:  2008-02-29       Impact factor: 5.469

4.  ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis.

Authors:  Xianwu Zheng; Olga Pontes; Jianhua Zhu; Daisuke Miki; Fei Zhang; Wen-Xue Li; Kei Iida; Avnish Kapoor; Craig S Pikaard; Jian-Kang Zhu
Journal:  Nature       Date:  2008-09-24       Impact factor: 49.962

Review 5.  Active DNA demethylation and DNA repair.

Authors:  Christof Niehrs
Journal:  Differentiation       Date:  2008-10-25       Impact factor: 3.880

6.  Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.

Authors:  Mamta Tahiliani; Kian Peng Koh; Yinghua Shen; William A Pastor; Hozefa Bandukwala; Yevgeny Brudno; Suneet Agarwal; Lakshminarayan M Iyer; David R Liu; L Aravind; Anjana Rao
Journal:  Science       Date:  2009-04-16       Impact factor: 47.728

7.  DNA demethylation in hormone-induced transcriptional derepression.

Authors:  Mi-Sun Kim; Takeshi Kondo; Ichiro Takada; Min-Young Youn; Yoko Yamamoto; Sayuri Takahashi; Takahiro Matsumoto; Sally Fujiyama; Yuko Shirode; Ikuko Yamaoka; Hirochika Kitagawa; Ken-ichi Takeyama; Hiroshi Shibuya; Fumiaki Ohtake; Shigeaki Kato
Journal:  Nature       Date:  2009-10-15       Impact factor: 49.962

8.  Neuronal activity-induced Gadd45b promotes epigenetic DNA demethylation and adult neurogenesis.

Authors:  Dengke K Ma; Mi-Hyeon Jang; Junjie U Guo; Yasuji Kitabatake; Min-Lin Chang; Nattapol Pow-Anpongkul; Richard A Flavell; Binfeng Lu; Guo-Li Ming; Hongjun Song
Journal:  Science       Date:  2009-01-01       Impact factor: 47.728

9.  Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification.

Authors:  Shinsuke Ito; Ana C D'Alessio; Olena V Taranova; Kwonho Hong; Lawrence C Sowers; Yi Zhang
Journal:  Nature       Date:  2010-08-26       Impact factor: 49.962

10.  DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45.

Authors:  Kunal Rai; Ian J Huggins; Smitha R James; Adam R Karpf; David A Jones; Bradley R Cairns
Journal:  Cell       Date:  2008-12-26       Impact factor: 41.582

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  29 in total

1.  Pyrene-based quantitative detection of the 5-formylcytosine loci symmetry in the CpG duplex content during TET-dependent demethylation.

Authors:  Liang Xu; Ying-Chu Chen; Jenny Chong; Andrea Fin; Lisa S McCoy; Jun Xu; Chao Zhang; Dong Wang
Journal:  Angew Chem Int Ed Engl       Date:  2014-08-27       Impact factor: 15.336

Review 2.  Nuclear receptors and epigenetic regulation: opportunities for nutritional targeting and disease prevention.

Authors:  Donato F Romagnolo; Janos Zempleni; Ornella I Selmin
Journal:  Adv Nutr       Date:  2014-07-14       Impact factor: 8.701

3.  Reversing DNA methylation: mechanisms, genomics, and biological functions.

Authors:  Hao Wu; Yi Zhang
Journal:  Cell       Date:  2014-01-16       Impact factor: 41.582

Review 4.  Base excision repair: a critical player in many games.

Authors:  Susan S Wallace
Journal:  DNA Repair (Amst)       Date:  2014-04-26

5.  Comprehensive assessment of cancer missense mutation clustering in protein structures.

Authors:  Atanas Kamburov; Michael S Lawrence; Paz Polak; Ignaty Leshchiner; Kasper Lage; Todd R Golub; Eric S Lander; Gad Getz
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-21       Impact factor: 11.205

Review 6.  Multifaceted roles for thymine DNA glycosylase in embryonic development and human carcinogenesis.

Authors:  Xuehe Xu; David S Watt; Chunming Liu
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2015-09-14       Impact factor: 3.848

Review 7.  TET enzymes, TDG and the dynamics of DNA demethylation.

Authors:  Rahul M Kohli; Yi Zhang
Journal:  Nature       Date:  2013-10-24       Impact factor: 49.962

8.  Nucleation of DNA repair factors by FOXA1 links DNA demethylation to transcriptional pioneering.

Authors:  Yu Zhang; Di Zhang; Qian Li; Jing Liang; Luyang Sun; Xia Yi; Zhe Chen; Ruorong Yan; Guojia Xie; Wanjin Li; Shumeng Liu; Bosen Xu; Lei Li; Jianguo Yang; Lin He; Yongfeng Shang
Journal:  Nat Genet       Date:  2016-08-08       Impact factor: 38.330

9.  Repression of Zeb1 and hypoxia cause sequential mesenchymal-to-epithelial transition and induction of aid, Oct4, and Dnmt1, leading to immortalization and multipotential reprogramming of fibroblasts in spheres.

Authors:  Yongqing Liu; Partha Mukhopadhyay; M Michele Pisano; Xiaoqin Lu; Li Huang; Qingxian Lu; Douglas C Dean
Journal:  Stem Cells       Date:  2013-07       Impact factor: 6.277

10.  A Chemical Probe Targets DNA 5-Formylcytosine Sites and Inhibits TDG Excision, Polymerases Bypass, and Gene Expression.

Authors:  Liang Xu; Ying-Chu Chen; Satoshi Nakajima; Jenny Chong; Lanfeng Wang; Li Lan; Chao Zhang; Dong Wang
Journal:  Chem Sci       Date:  2014-02-01       Impact factor: 9.825

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