Literature DB >> 19829383

DNA demethylation in hormone-induced transcriptional derepression.

Mi-Sun Kim1, Takeshi Kondo, Ichiro Takada, Min-Young Youn, Yoko Yamamoto, Sayuri Takahashi, Takahiro Matsumoto, Sally Fujiyama, Yuko Shirode, Ikuko Yamaoka, Hirochika Kitagawa, Ken-ichi Takeyama, Hiroshi Shibuya, Fumiaki Ohtake, Shigeaki Kato.   

Abstract

Epigenetic modifications at the histone level affect gene regulation in response to extracellular signals. However, regulated epigenetic modifications at the DNA level, especially active DNA demethylation, in gene activation are not well understood. Here we report that DNA methylation/demethylation is hormonally switched to control transcription of the cytochrome p450 27B1 (CYP27B1) gene. Reflecting vitamin-D-mediated transrepression of the CYP27B1 gene by the negative vitamin D response element (nVDRE), methylation of CpG sites ((5m)CpG) is induced by vitamin D in this gene promoter. Conversely, treatment with parathyroid hormone, a hormone known to activate the CYP27B1 gene, induces active demethylation of the (5m)CpG sites in this promoter. Biochemical purification of a complex associated with the nVDRE-binding protein (VDIR, also known as TCF3) identified two DNA methyltransferases, DNMT1 and DNMT3B, for methylation of CpG sites, as well as a DNA glycosylase, MBD4 (ref. 10). Protein-kinase-C-phosphorylated MBD4 by parathyroid hormone stimulation promotes incision of methylated DNA through glycosylase activity, and a base-excision repair process seems to complete DNA demethylation in the MBD4-bound promoter. Such parathyroid-hormone-induced DNA demethylation and subsequent transcriptional derepression are impaired in Mbd4(-/-) mice. Thus, the present findings suggest that methylation switching at the DNA level contributes to the hormonal control of transcription.

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Year:  2009        PMID: 19829383     DOI: 10.1038/nature08456

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  30 in total

1.  DNA methyltransferase Dnmt1 associates with histone deacetylase activity.

Authors:  F Fuks; W A Burgers; A Brehm; L Hughes-Davies; T Kouzarides
Journal:  Nat Genet       Date:  2000-01       Impact factor: 38.330

Review 2.  HP1 and the dynamics of heterochromatin maintenance.

Authors:  Christèle Maison; Geneviève Almouzni
Journal:  Nat Rev Mol Cell Biol       Date:  2004-04       Impact factor: 94.444

Review 3.  Epigenetics: a landscape takes shape.

Authors:  Aaron D Goldberg; C David Allis; Emily Bernstein
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

4.  DEMETER DNA glycosylase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation.

Authors:  Mary Gehring; Jin Hoe Huh; Tzung-Fu Hsieh; Jon Penterman; Yeonhee Choi; John J Harada; Robert B Goldberg; Robert L Fischer
Journal:  Cell       Date:  2006-02-10       Impact factor: 41.582

5.  Human thymine DNA glycosylase binds to apurinic sites in DNA but is displaced by human apurinic endonuclease 1.

Authors:  T R Waters; P Gallinari; J Jiricny; P F Swann
Journal:  J Biol Chem       Date:  1999-01-01       Impact factor: 5.157

6.  Precipitous release of methyl-CpG binding protein 2 and histone deacetylase 1 from the methylated human multidrug resistance gene (MDR1) on activation.

Authors:  Assam El-Osta; Phillip Kantharidis; John R Zalcberg; Alan P Wolffe
Journal:  Mol Cell Biol       Date:  2002-03       Impact factor: 4.272

7.  Association of CBP/p300 acetylase and thymine DNA glycosylase links DNA repair and transcription.

Authors:  Marc Tini; Arndt Benecke; Soo-Joong Um; Joseph Torchia; Ronald M Evans; Pierre Chambon
Journal:  Mol Cell       Date:  2002-02       Impact factor: 17.970

8.  Mice lacking the vitamin D receptor exhibit impaired bone formation, uterine hypoplasia and growth retardation after weaning.

Authors:  T Yoshizawa; Y Handa; Y Uematsu; S Takeda; K Sekine; Y Yoshihara; T Kawakami; K Arioka; H Sato; Y Uchiyama; S Masushige; A Fukamizu; T Matsumoto; S Kato
Journal:  Nat Genet       Date:  1997-08       Impact factor: 38.330

9.  Enhanced CpG mutability and tumorigenesis in MBD4-deficient mice.

Authors:  Catherine B Millar; Jacky Guy; Owen J Sansom; Jim Selfridge; Eilidh MacDougall; Brian Hendrich; Peter D Keightley; Stefan M Bishop; Alan R Clarke; Adrian Bird
Journal:  Science       Date:  2002-07-19       Impact factor: 47.728

10.  DNA Cytosine demethylation: are we getting close?

Authors:  Josef Jiricny; Mirco Menigatti
Journal:  Cell       Date:  2008-12-26       Impact factor: 41.582

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  91 in total

1.  Direct repair of 3,N(4)-ethenocytosine by the human ALKBH2 dioxygenase is blocked by the AAG/MPG glycosylase.

Authors:  Dragony Fu; Leona D Samson
Journal:  DNA Repair (Amst)       Date:  2011-11-11

2.  DNA methylation: superior or subordinate in the epigenetic hierarchy?

Authors:  Bilian Jin; Yajun Li; Keith D Robertson
Journal:  Genes Cancer       Date:  2011-06

3.  Retraction: DNA demethylation in hormone-induced transcriptional derepression.

Authors:  Mi-Sun Kim; Takeshi Kondo; Ichiro Takada; Min-Young Youn; Yoko Yamamoto; Sayuri Takahashi; Takahiro Matsumoto; Sally Fujiyama; Yuko Shirode; Ikuko Yamaoka; Hirochika Kitagawa; Ken-Ichi Takeyama; Hiroshi Shibuya; Fumiaki Ohtake; Shigeaki Kato
Journal:  Nature       Date:  2012-06-13       Impact factor: 49.962

4.  PTH/PTHrP and vitamin D control antimicrobial peptide expression and susceptibility to bacterial skin infection.

Authors:  Beda Muehleisen; Daniel D Bikle; Carlos Aguilera; Douglas W Burton; George L Sen; Leonard J Deftos; Richard L Gallo
Journal:  Sci Transl Med       Date:  2012-05-23       Impact factor: 17.956

Review 5.  Epigenetic programming and risk: the birthplace of cardiovascular disease?

Authors:  Maria Cristina Vinci; Gianluca Polvani; Maurizio Pesce
Journal:  Stem Cell Rev Rep       Date:  2013-06       Impact factor: 5.739

6.  Meeting report: nuclear receptors: transcription factors and drug targets connecting basic research with translational medicine.

Authors:  Jan Tuckermann; William Bourguet; Susanne Mandrup
Journal:  Mol Endocrinol       Date:  2010-06-02

7.  Targets and dynamics of promoter DNA methylation during early mouse development.

Authors:  Julie Borgel; Sylvain Guibert; Yufeng Li; Hatsune Chiba; Dirk Schübeler; Hiroyuki Sasaki; Thierry Forné; Michael Weber
Journal:  Nat Genet       Date:  2010-11-07       Impact factor: 38.330

Review 8.  Epigenetic GABAergic targets in schizophrenia and bipolar disorder.

Authors:  A Guidotti; J Auta; Y Chen; J M Davis; E Dong; D P Gavin; D R Grayson; F Matrisciano; G Pinna; R Satta; R P Sharma; L Tremolizzo; P Tueting
Journal:  Neuropharmacology       Date:  2010-11-11       Impact factor: 5.250

Review 9.  Minireview: Extranuclear steroid receptors: roles in modulation of cell functions.

Authors:  Ellis R Levin
Journal:  Mol Endocrinol       Date:  2010-09-22

10.  Phosphorylation of Williams syndrome transcription factor by MAPK induces a switching between two distinct chromatin remodeling complexes.

Authors:  Hiroyuki Oya; Atsushi Yokoyama; Ikuko Yamaoka; Ryoji Fujiki; Masayoshi Yonezawa; Min-Young Youn; Ichiro Takada; Shigeaki Kato; Hirochika Kitagawa
Journal:  J Biol Chem       Date:  2009-09-23       Impact factor: 5.157

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