Literature DB >> 24780558

Base excision repair: a critical player in many games.

Susan S Wallace1.   

Abstract

This perspective reviews the many dimensions of base excision repair from a 10,000 foot vantage point and provides one person's view on where the field is headed. Enzyme function is considered under the lens of X-ray diffraction and single molecule studies. Base excision repair in chromatin and telomeres, regulation of expression and the role of posttranslational modifications are <span class="Disease">also discussed in the context of enzyme activities, cellular localization and interacting partners. The specialized roles that base excision repair play in transcriptional activation by active demethylation and targeted oxidation as well as how base excision repair functions in the immune processes of somatic hypermutation and class switch recombination and its possible involvement in retroviral infection are also discussed. Finally the complexities of oxidative damage and its repair and its link to neurodegenerative disorders, as well as the role of base excision repair as a tumor suppressor are examined in the context of damage, repair and aging. By outlining the many base excision repair-related mysteries that have yet to be unraveled, hopefully this perspective will stimulate further interest in the field.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  AP endonuclease; Aging; BER and transcriptional regulation; BER crosspathways; BER in the immune system; BER subpathways; Base excision repair; Cancer; DNA glycosylase search; DNA glycosylases; Neurodegenerative diseases; Repair enzyme structures; Repair in chromatin; Repair in telomeres

Mesh:

Substances:

Year:  2014        PMID: 24780558      PMCID: PMC4100245          DOI: 10.1016/j.dnarep.2014.03.030

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  163 in total

1.  Nucleosome disruption by DNA ligase III-XRCC1 promotes efficient base excision repair.

Authors:  Ian D Odell; Joy-El Barbour; Drew L Murphy; Julie A Della-Maria; Joann B Sweasy; Alan E Tomkinson; Susan S Wallace; David S Pederson
Journal:  Mol Cell Biol       Date:  2011-09-19       Impact factor: 4.272

2.  mtSSB may sequester UNG1 at mitochondrial ssDNA and delay uracil processing until the dsDNA conformation is restored.

Authors:  Kristian Wollen Steen; Berit Doseth; Marianne P Westbye; Mansour Akbari; Dongchon Kang; Maria Falkenberg; Geir Slupphaug
Journal:  DNA Repair (Amst)       Date:  2011-12-05

Review 3.  A review of recent experiments on step-to-step "hand-off" of the DNA intermediates in mammalian base excision repair pathways.

Authors:  R Prasad; W A Beard; V K Batra; Y Liu; D D Shock; S H Wilson
Journal:  Mol Biol (Mosk)       Date:  2011 Jul-Aug

Review 4.  Telomere dysfunction and chromosome instability.

Authors:  John P Murnane
Journal:  Mutat Res       Date:  2011-05-07       Impact factor: 2.433

5.  Poly(ADP-ribose) polymerase 1 (PARP-1) binds to 8-oxoguanine-DNA glycosylase (OGG1).

Authors:  Nicole Noren Hooten; Kari Kompaniez; Janice Barnes; Althaf Lohani; Michele K Evans
Journal:  J Biol Chem       Date:  2011-11-04       Impact factor: 5.157

6.  Structural characterization of viral ortholog of human DNA glycosylase NEIL1 bound to thymine glycol or 5-hydroxyuracil-containing DNA.

Authors:  Kayo Imamura; April Averill; Susan S Wallace; Sylvie Doublié
Journal:  J Biol Chem       Date:  2011-12-14       Impact factor: 5.157

7.  Single Qdot-labeled glycosylase molecules use a wedge amino acid to probe for lesions while scanning along DNA.

Authors:  Andrew R Dunn; Neil M Kad; Shane R Nelson; David M Warshaw; Susan S Wallace
Journal:  Nucleic Acids Res       Date:  2011-06-11       Impact factor: 16.971

8.  Ubiquitin ligase UBR3 regulates cellular levels of the essential DNA repair protein APE1 and is required for genome stability.

Authors:  Cornelia Meisenberg; Phillip S Tait; Irina I Dianova; Katherine Wright; Mariola J Edelmann; Nicola Ternette; Takafumi Tasaki; Benedikt M Kessler; Jason L Parsons; Yong Tae Kwon; Grigory L Dianov
Journal:  Nucleic Acids Res       Date:  2011-09-20       Impact factor: 16.971

Review 9.  DNA glycosylases: in DNA repair and beyond.

Authors:  Angelika L Jacobs; Primo Schär
Journal:  Chromosoma       Date:  2011-11-03       Impact factor: 4.316

10.  XRCC1 coordinates disparate responses and multiprotein repair complexes depending on the nature and context of the DNA damage.

Authors:  Audun Hanssen-Bauer; Karin Solvang-Garten; Ottar Sundheim; Javier Peña-Diaz; Sonja Andersen; Geir Slupphaug; Hans E Krokan; David M Wilson; Mansour Akbari; Marit Otterlei
Journal:  Environ Mol Mutagen       Date:  2011-07-22       Impact factor: 3.216

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  150 in total

1.  Detection of uracil within DNA using a sensitive labeling method for in vitro and cellular applications.

Authors:  Gergely Róna; Ildikó Scheer; Kinga Nagy; Hajnalka L Pálinkás; Gergely Tihanyi; Máté Borsos; Angéla Békési; Beáta G Vértessy
Journal:  Nucleic Acids Res       Date:  2015-10-01       Impact factor: 16.971

2.  Guanine oxidation product 5-carboxamido-5-formamido-2-iminohydantoin induces mutations when bypassed by DNA polymerases and is a substrate for base excision repair.

Authors:  Omar R Alshykhly; Aaron M Fleming; Cynthia J Burrows
Journal:  Chem Res Toxicol       Date:  2015-09-02       Impact factor: 3.739

Review 3.  A role for the base excision repair enzyme NEIL3 in replication-dependent repair of interstrand DNA cross-links derived from psoralen and abasic sites.

Authors:  Zhiyu Yang; Maryam Imani Nejad; Jacqueline Gamboa Varela; Nathan E Price; Yinsheng Wang; Kent S Gates
Journal:  DNA Repair (Amst)       Date:  2017-02-20

Review 4.  p53 and RAD9, the DNA Damage Response, and Regulation of Transcription Networks.

Authors:  Howard B Lieberman; Sunil K Panigrahi; Kevin M Hopkins; Li Wang; Constantinos G Broustas
Journal:  Radiat Res       Date:  2017-01-31       Impact factor: 2.841

5.  Oxidative DNA damage is epigenetic by regulating gene transcription via base excision repair.

Authors:  Aaron M Fleming; Yun Ding; Cynthia J Burrows
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-31       Impact factor: 11.205

Review 6.  Mechanisms and Consequences of Double-Strand DNA Break Formation in Chromatin.

Authors:  Wendy J Cannan; David S Pederson
Journal:  J Cell Physiol       Date:  2016-01       Impact factor: 6.384

7.  Endonuclease and redox activities of human apurinic/apyrimidinic endonuclease 1 have distinctive and essential functions in IgA class switch recombination.

Authors:  Barbara Frossi; Giulia Antoniali; Kefei Yu; Nahid Akhtar; Mark H Kaplan; Mark R Kelley; Gianluca Tell; Carlo E M Pucillo
Journal:  J Biol Chem       Date:  2019-01-31       Impact factor: 5.157

Review 8.  Heat-shock proteins: chaperoning DNA repair.

Authors:  Laurence Dubrez; Sébastien Causse; Natalia Borges Bonan; Baptiste Dumétier; Carmen Garrido
Journal:  Oncogene       Date:  2019-09-20       Impact factor: 9.867

9.  Genome-wide alterations of uracil distribution patterns in human DNA upon chemotherapeutic treatments.

Authors:  Hajnalka L Pálinkás; Angéla Békési; Gergely Róna; Lőrinc Pongor; Gábor Papp; Gergely Tihanyi; Eszter Holub; Ádám Póti; Carolina Gemma; Simak Ali; Michael J Morten; Eli Rothenberg; Michele Pagano; Dávid Szűts; Balázs Győrffy; Beáta G Vértessy
Journal:  Elife       Date:  2020-09-21       Impact factor: 8.140

10.  Characterization of the Catalytic Domain of Human APOBEC3B and the Critical Structural Role for a Conserved Methionine.

Authors:  Sachini U Siriwardena; Thisari A Guruge; Ashok S Bhagwat
Journal:  J Mol Biol       Date:  2015-08-14       Impact factor: 5.469

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