Literature DB >> 22920098

Self-consistent treatment of the local dielectric permittivity and electrostatic potential in solution for polarizable macromolecular force fields.

Sergio A Hassan1.   

Abstract

A self-consistent method is presented for the calculation of the local dielectric permittivity and electrostatic potential generated by a solute of arbitrary shape and charge distribution in a polar and polarizable liquid. The structure and dynamics behavior of the liquid at the solute/liquid interface determine the spatial variations of the density and the dielectric response. Emphasis here is on the treatment of the interface. The method is an extension of conventional methods used in continuum protein electrostatics, and can be used to estimate changes in the static dielectric response of the liquid as it adapts to charge redistribution within the solute. This is most relevant in the context of polarizable force fields, during electron structure optimization in quantum chemical calculations, or upon charge transfer. The method is computationally efficient and well suited for code parallelization, and can be used for on-the-fly calculations of the local permittivity in dynamics simulations of systems with large and heterogeneous charge distributions, such as proteins, nucleic acids, and polyelectrolytes. Numerical calculation of the system free energy is discussed for the general case of a liquid with field-dependent dielectric response.

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Year:  2012        PMID: 22920098      PMCID: PMC3432095          DOI: 10.1063/1.4742910

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  32 in total

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4.  Water-exclusion and liquid-structure forces in implicit solvation.

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5.  Density depletion at solid-liquid interfaces: a neutron reflectivity study.

Authors:  M Maccarini; R Steitz; M Himmelhaus; J Fick; S Tatur; M Wolff; M Grunze; J Janecek; R R Netz
Journal:  Langmuir       Date:  2007-01-16       Impact factor: 3.882

6.  Electrostriction in electrolyte solutions.

Authors:  Yizhak Marcus
Journal:  Chem Rev       Date:  2011-02-14       Impact factor: 60.622

7.  Calculation of the dielectric properties of a protein and its solvent: theory and a case study.

Authors:  G Löffler; H Schreiber; O Steinhauser
Journal:  J Mol Biol       Date:  1997-07-18       Impact factor: 5.469

8.  Polarizable empirical force field for alkanes based on the classical Drude oscillator model.

Authors:  Igor V Vorobyov; Victor M Anisimov; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2005-10-13       Impact factor: 2.991

9.  Fluctuations of water near extended hydrophobic and hydrophilic surfaces.

Authors:  Amish J Patel; Patrick Varilly; David Chandler
Journal:  J Phys Chem B       Date:  2010-02-04       Impact factor: 2.991

10.  Continuum simulations of acetylcholine consumption by acetylcholinesterase: a Poisson-Nernst-Planck approach.

Authors:  Y C Zhou; Benzhuo Lu; Gary A Huber; Michael J Holst; J Andrew McCammon
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  4 in total

1.  Specific and non-specific protein association in solution: computation of solvent effects and prediction of first-encounter modes for efficient configurational bias Monte Carlo simulations.

Authors:  Antonio Cardone; Harish Pant; Sergio A Hassan
Journal:  J Phys Chem B       Date:  2013-10-07       Impact factor: 2.991

2.  Implicit treatment of solvent dispersion forces in protein simulations.

Authors:  Sergio A Hassan
Journal:  J Comput Chem       Date:  2014-06-12       Impact factor: 3.376

3.  The electrostatic response of water to neutral polar solutes: implications for continuum solvent modeling.

Authors:  Hari S Muddana; Neil V Sapra; Andrew T Fenley; Michael K Gilson
Journal:  J Chem Phys       Date:  2013-06-14       Impact factor: 3.488

Review 4.  Biomolecular interactions of ultrasmall metallic nanoparticles and nanoclusters.

Authors:  Alioscka A Sousa; Peter Schuck; Sergio A Hassan
Journal:  Nanoscale Adv       Date:  2021-04-28
  4 in total

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