Literature DB >> 22887659

Revised genome sequence of Burkholderia thailandensis MSMB43 with improved annotation.

Ying Zhuo1, Lin Liu, Qi Wang, Xiangyang Liu, Biao Ren, Mei Liu, Peixiang Ni, Yi-Qiang Cheng, Lixin Zhang.   

Abstract

There is growing interest in discovery of novel bioactive natural products from Burkholderia thailandensis. Here we report a significantly improved genome sequence and reannotation of Burkholderia thailandensis MSMB43, which will facilitate the discovery of new natural products through genome mining and studies of the metabolic versatility of this bacterium.

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Year:  2012        PMID： 22887659      PMCID： PMC3415525          DOI： 10.1128/JB.00931-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  18 in total

1.  Discovery and activity profiling of thailandepsins A through F, potent histone deacetylase inhibitors, from Burkholderia thailandensis E264.

Authors:  Cheng Wang; Creston J Flemming; Yi-Qiang Cheng
Journal:  Medchemcomm       Date:  2012-08-01       Impact factor: 3.597

2.  High-redundancy draft sequencing of 15 clinical and environmental Burkholderia strains.

Authors:  Sanghamitra Mukhopadhyay; Maureen K Thomason; Shannon Lentz; Nichole Nolan; Kristin Willner; Jay E Gee; Mindy B Glass; Timothy J J Inglis; Adam Merritt; Avram Levy; Shanmuga Sozhamannan; Al Mateczun; Timothy D Read
Journal:  J Bacteriol       Date:  2010-09-24       Impact factor: 3.490

3.  Acyldepsipeptide HDAC inhibitor production induced in Burkholderia thailandensis.

Authors:  John B Biggins; Conrad D Gleber; Sean F Brady
Journal:  Org Lett       Date:  2011-02-24       Impact factor: 6.005

4.  Histone deacetylase inhibitors from Burkholderia thailandensis.

Authors:  Paul Klausmeyer; Suzanne M Shipley; Karina M Zuck; Thomas G McCloud
Journal:  J Nat Prod       Date:  2011-10-03       Impact factor: 4.050

5.  Characterization of a gene cluster responsible for the biosynthesis of anticancer agent FK228 in Chromobacterium violaceum No. 968.

Authors:  Yi-Qiang Cheng; Min Yang; Andrea M Matter
Journal:  Appl Environ Microbiol       Date:  2007-03-30       Impact factor: 4.792

6.  Thailandepsins: bacterial products with potent histone deacetylase inhibitory activities and broad-spectrum antiproliferative activities.

Authors:  Cheng Wang; Leonhard M Henkes; Leah B Doughty; Min He; Difei Wang; Franz-Josef Meyer-Almes; Yi-Qiang Cheng
Journal:  J Nat Prod       Date:  2011-07-27       Impact factor: 4.050

7.  Quorum-sensing control of antibiotic synthesis in Burkholderia thailandensis.

Authors:  Breck A Duerkop; John Varga; Josephine R Chandler; Snow Brook Peterson; Jake P Herman; Mair E A Churchill; Matthew R Parsek; William C Nierman; E Peter Greenberg
Journal:  J Bacteriol       Date:  2009-04-17       Impact factor: 3.490

8.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Authors:  Marnix H Medema; Kai Blin; Peter Cimermancic; Victor de Jager; Piotr Zakrzewski; Michael A Fischbach; Tilmann Weber; Eriko Takano; Rainer Breitling
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

9.  Sources of diversity in bactobolin biosynthesis by Burkholderia thailandensis E264.

Authors:  Gavin Carr; Mohammad R Seyedsayamdost; Josephine R Chandler; E Peter Greenberg; Jon Clardy
Journal:  Org Lett       Date:  2011-05-26       Impact factor: 6.005

10.  Recovery of a Burkholderia thailandensis-like isolate from an Australian water source.

Authors:  Jay E Gee; Mindy B Glass; Ryan T Novak; Daniel Gal; Mark J Mayo; Arnold G Steigerwalt; Patricia P Wilkins; Bart J Currie
Journal:  BMC Microbiol       Date:  2008-04-02       Impact factor: 3.605
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  7 in total

1.  Genomics-guided discovery of thailanstatins A, B, and C As pre-mRNA splicing inhibitors and antiproliferative agents from Burkholderia thailandensis MSMB43.

Authors:  Xiangyang Liu; Sreya Biswas; Michael G Berg; Christopher M Antapli; Feng Xie; Qi Wang; Man-Cheng Tang; Gong-Li Tang; Lixin Zhang; Gideon Dreyfuss; Yi-Qiang Cheng
Journal:  J Nat Prod       Date:  2013-03-21       Impact factor: 4.050

2.  Resequencing of Treponema pallidum ssp. pallidum strains Nichols and SS14: correction of sequencing errors resulted in increased separation of syphilis treponeme subclusters.

Authors:  Helena Pětrošová; Petra Pospíšilová; Michal Strouhal; Darina Čejková; Marie Zobaníková; Lenka Mikalová; Erica Sodergren; George M Weinstock; David Šmajs
Journal:  PLoS One       Date:  2013-09-10       Impact factor: 3.240

3.  Genomics-guided discovery of a new and significantly better source of anticancer natural drug FK228.

Authors:  Xiangyang Liu; Feng Xie; Leah B Doughty; Qi Wang; Lixin Zhang; Xueting Liu; Yi-Qiang Cheng
Journal:  Synth Syst Biotechnol       Date:  2018-11-05

4.  Cyclo-(-l-prolyl-l-valinyl-) from Burkholderia thailandensis MSMB43.

Authors:  Xiang-Yang Liu; Cheng Wang; Yi-Qiang Cheng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-20

5.  FK228 from Burkholderia thailandensis MSMB43.

Authors:  Xiang-Yang Liu; Cheng Wang; Yi-Qiang Cheng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-23

6.  Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis.

Authors:  Nicolas Buisine; Xiaoan Ruan; Patrice Bilesimo; Alexis Grimaldi; Gladys Alfama; Pramila Ariyaratne; Fabianus Mulawadi; Jieqi Chen; Wing-Kin Sung; Edison T Liu; Barbara A Demeneix; Yijun Ruan; Laurent M Sachs
Journal:  PLoS One       Date:  2015-09-08       Impact factor: 3.240

Review 7.  Generate a bioactive natural product library by mining bacterial cytochrome P450 patterns.

Authors:  Xiangyang Liu
Journal:  Synth Syst Biotechnol       Date:  2016-02-26
  7 in total

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