Literature DB >> 23284494

Cyclo-(-l-prolyl-l-valinyl-) from Burkholderia thailandensis MSMB43.

Xiang-Yang Liu1, Cheng Wang, Yi-Qiang Cheng.   

Abstract

THE TITLE COMPOUND [SYSTEMATIC NAME: (3S,8aS)-3-isopropyl-hexa-hydro-pyrrolo-[1,2-a]pyrazine-1,4-dione], C(10)H(16)N(2)O(2),, is a newly isolated cyclic dipeptide from Burkholderia thailandensis MSMB43. There are two independent mol-ecules in the asymmetric unit. Two C atoms and their attached H atoms in the five-membered ring of one of the mol-ecules are disordered over two sets of sites in a 0.715 (5):0.285 (5) ratio. The two independent mol-ecules have the same configuration and the absolute configurations of the chiral centers were determined based on the observation of anomalous dispersion. In the crystal, two types of N-H⋯O hydrogen bonds link pairs of independent mol-ecules.

Entities:  

Year:  2012        PMID: 23284494      PMCID: PMC3515274          DOI: 10.1107/S1600536812043000

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to secondary metabolites from B. thailandensis, see: Knappe et al. (2008 ▶); Nguyen et al. (2008 ▶); Seyedsayamdost et al. (2010 ▶); Ishida et al. (2010 ▶); Klausmeyer et al. (2011 ▶); Biggins et al. (2011 ▶); Wang et al. (2011 ▶, 2012 ▶); Ishida et al. (2012 ▶). For isolation of the title compound from other microorganisms, see: Chen (1960 ▶); Schmitz et al. (1983 ▶); Jayatilake et al. (1996 ▶); Ginz & Engelhardt (2000 ▶); Qi et al. (2009 ▶); Wang et al. (2010 ▶); Park et al. (2006 ▶). For the biological activity of the title compound, see: Holden et al. (1999 ▶); Fdhila et al. (2003 ▶). For large-scale genome sequencing, see: Mukhopadhyay et al. (2010 ▶); Yu et al. (2006 ▶); Zhuo et al. (2012 ▶). For our work on obtaining natural products from B. thailandensis MSMB43, see: Liu et al. (2012 ▶).

Experimental

Crystal data

C10H16N2O2 M = 196.25 Orthorhombic, a = 5.6227 (1) Å b = 10.2571 (2) Å c = 34.2115 (6) Å V = 1973.07 (6) Å3 Z = 8 Cu Kα radiation μ = 0.76 mm−1 T = 100 K 0.22 × 0.14 × 0.10 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.851, T max = 0.928 28285 measured reflections 3668 independent reflections 3354 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.075 S = 1.02 3668 reflections 271 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.23 e Å−3 Absolute structure: Flack (1983 ▶), 1481 Friedel pairs Flack parameter: 0.05 (17) Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: SHELXTL and OLEX2. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812043000/ff2084sup1.cif Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812043000/ff2084Isup2.cdx Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812043000/ff2084Isup3.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812043000/ff2084Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H16N2O2F(000) = 848
Mr = 196.25Dx = 1.321 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ac 2abCell parameters from 999 reflections
a = 5.6227 (1) Åθ = 2.6–69.5°
b = 10.2571 (2) ŵ = 0.76 mm1
c = 34.2115 (6) ÅT = 100 K
V = 1973.07 (6) Å3Needle, colourless
Z = 80.22 × 0.14 × 0.10 mm
Bruker APEXII area-detector diffractometer3668 independent reflections
Radiation source: fine-focus sealed tube3354 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.045
0.50° ω and 0.5 ° φ scansθmax = 69.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −6→6
Tmin = 0.851, Tmax = 0.928k = −12→12
28285 measured reflectionsl = −40→41
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.031H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.075w = 1/[σ2(Fo2) + (0.0411P)2 + 0.438P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
3668 reflectionsΔρmax = 0.30 e Å3
271 parametersΔρmin = −0.23 e Å3
3 restraintsAbsolute structure: Flack (1983), 1481 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.05 (17)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O1−0.0686 (2)0.57786 (10)0.42809 (3)0.0185 (2)
O20.6845 (2)0.29334 (10)0.46538 (3)0.0189 (2)
N10.1607 (2)0.39828 (12)0.41718 (4)0.0158 (3)
H10.120 (3)0.3984 (17)0.3926 (6)0.019*
N20.4056 (2)0.44278 (12)0.48284 (4)0.0151 (3)
C10.0698 (3)0.49203 (15)0.43957 (4)0.0154 (3)
C20.1570 (3)0.48683 (15)0.48164 (4)0.0152 (3)
H20.05590.42460.49680.018*
C30.1676 (3)0.61678 (15)0.50308 (5)0.0177 (3)
H3A0.01380.63730.51570.021*
H3B0.21090.68860.48510.021*
C40.3622 (3)0.59338 (16)0.53340 (4)0.0179 (3)
H4A0.42590.67670.54360.021*
H4B0.30250.54040.55550.021*
C50.5497 (3)0.51970 (15)0.51009 (4)0.0167 (3)
H5A0.65620.58040.49600.020*
H5B0.64630.46280.52720.020*
C60.4837 (3)0.34091 (14)0.46205 (4)0.0155 (3)
C70.2933 (3)0.28844 (14)0.43410 (4)0.0155 (3)
H70.17870.23600.45000.019*
C80.3954 (3)0.19864 (15)0.40270 (4)0.0175 (3)
H80.49580.13210.41630.021*
C90.1969 (3)0.12534 (16)0.38147 (5)0.0215 (3)
H9A0.10290.18700.36600.032*
H9B0.09400.08250.40070.032*
H9C0.26680.05960.36410.032*
C100.5556 (3)0.27055 (17)0.37385 (5)0.0218 (3)
H10A0.46030.33230.35860.033*
H10B0.63050.20750.35620.033*
H10C0.67900.31800.38820.033*
O1A1.0544 (2)0.43773 (11)0.33589 (3)0.0214 (2)
O2A0.4323 (2)0.77776 (12)0.27683 (3)0.0320 (3)
N1A0.7596 (2)0.58471 (13)0.34599 (4)0.0186 (3)
H1A0.799 (3)0.5861 (18)0.3720 (6)0.022*
N2A0.6766 (3)0.60603 (14)0.26780 (4)0.0221 (3)
C1A0.8856 (3)0.50385 (15)0.32357 (4)0.0172 (3)
C2A0.8103 (3)0.49229 (16)0.28135 (4)0.0190 (3)
H2A0.70140.41550.27950.023*0.715 (5)
H2B0.72740.40810.27560.023*0.285 (5)
C3A1.0062 (5)0.4726 (3)0.25090 (7)0.0201 (8)0.715 (5)
H3C0.97970.39060.23630.024*0.715 (5)
H3D1.16370.46800.26380.024*0.715 (5)
C4A0.9952 (6)0.5904 (3)0.22307 (7)0.0283 (7)0.715 (5)
H4C1.03890.56560.19600.034*0.715 (5)
H4D1.10010.66190.23200.034*0.715 (5)
C3B1.0460 (10)0.5041 (11)0.25504 (12)0.0201 (8)0.285 (5)
H3E1.15670.57260.26420.024*0.285 (5)
H3F1.13060.42010.25180.024*0.285 (5)
C4B0.9032 (14)0.5445 (9)0.21869 (9)0.0283 (7)0.285 (5)
H4E1.01310.58460.19960.034*0.285 (5)
H4F0.83550.46520.20650.034*0.285 (5)
C5A0.7235 (3)0.62958 (18)0.22612 (5)0.0281 (4)
H5C0.69820.72220.21910.034*0.715 (5)
H5D0.62280.57380.20930.034*0.715 (5)
H5E0.77430.72100.22200.034*0.285 (5)
H5F0.57900.61310.21040.034*0.285 (5)
C6A0.5464 (3)0.68536 (16)0.28998 (5)0.0218 (4)
C7A0.5431 (3)0.65377 (15)0.33383 (4)0.0187 (3)
H7A0.40410.59540.33900.022*
C8A0.5085 (3)0.77939 (15)0.35758 (4)0.0189 (3)
H8A0.37580.82890.34500.023*
C9A0.4322 (3)0.75127 (17)0.39963 (5)0.0234 (4)
H9D0.56010.70500.41330.035*
H9E0.28850.69720.39950.035*
H9F0.39900.83360.41310.035*
C10A0.7283 (3)0.86638 (17)0.35596 (5)0.0262 (4)
H10D0.69270.95040.36830.039*
H10E0.77400.88050.32860.039*
H10F0.85950.82410.36990.039*
U11U22U33U12U13U23
O10.0189 (5)0.0192 (5)0.0175 (5)0.0049 (5)−0.0028 (5)−0.0005 (4)
O20.0154 (5)0.0211 (5)0.0203 (5)0.0032 (5)−0.0027 (5)−0.0004 (5)
N10.0175 (7)0.0179 (6)0.0119 (6)0.0029 (6)−0.0035 (5)0.0006 (5)
N20.0145 (6)0.0170 (6)0.0138 (6)0.0008 (5)−0.0021 (5)−0.0011 (5)
C10.0140 (7)0.0174 (7)0.0148 (7)−0.0030 (7)−0.0006 (6)0.0004 (6)
C20.0138 (7)0.0172 (7)0.0147 (7)0.0002 (6)0.0006 (6)0.0001 (6)
C30.0151 (7)0.0201 (7)0.0178 (7)0.0007 (6)−0.0001 (6)−0.0028 (6)
C40.0160 (8)0.0216 (7)0.0161 (7)−0.0018 (7)−0.0014 (6)−0.0019 (6)
C50.0162 (7)0.0184 (7)0.0155 (7)−0.0020 (7)−0.0034 (6)0.0001 (6)
C60.0173 (8)0.0152 (7)0.0139 (7)−0.0016 (6)−0.0007 (6)0.0036 (6)
C70.0169 (8)0.0145 (7)0.0151 (7)0.0005 (6)−0.0001 (6)0.0025 (6)
C80.0189 (8)0.0167 (7)0.0169 (7)0.0023 (6)−0.0022 (6)−0.0004 (6)
C90.0243 (8)0.0211 (8)0.0190 (8)−0.0011 (7)0.0001 (7)−0.0048 (7)
C100.0191 (8)0.0266 (8)0.0198 (8)0.0015 (7)0.0021 (7)−0.0020 (7)
O1A0.0228 (6)0.0242 (6)0.0173 (5)0.0066 (5)−0.0020 (5)0.0014 (5)
O2A0.0418 (7)0.0346 (7)0.0197 (6)0.0179 (6)−0.0074 (6)0.0000 (5)
N1A0.0206 (7)0.0212 (7)0.0139 (6)0.0020 (6)−0.0046 (5)−0.0001 (6)
N2A0.0271 (7)0.0247 (7)0.0146 (6)0.0064 (6)−0.0050 (6)−0.0003 (5)
C1A0.0181 (8)0.0158 (7)0.0177 (7)−0.0024 (6)−0.0013 (6)0.0010 (6)
C2A0.0209 (8)0.0191 (7)0.0169 (8)0.0005 (7)−0.0020 (7)0.0001 (7)
C3A0.0151 (12)0.0287 (18)0.0164 (9)−0.0045 (11)−0.0045 (9)−0.0028 (9)
C4A0.0290 (18)0.0287 (16)0.0271 (11)0.0011 (12)0.0122 (11)0.0109 (11)
C3B0.0151 (12)0.0287 (18)0.0164 (9)−0.0045 (11)−0.0045 (9)−0.0028 (9)
C4B0.0290 (18)0.0287 (16)0.0271 (11)0.0011 (12)0.0122 (11)0.0109 (11)
C5A0.0412 (11)0.0307 (9)0.0124 (8)0.0064 (8)−0.0042 (7)0.0000 (7)
C6A0.0223 (9)0.0243 (8)0.0187 (8)0.0034 (8)−0.0070 (7)−0.0028 (7)
C7A0.0174 (8)0.0204 (8)0.0182 (7)0.0004 (6)−0.0025 (7)0.0026 (6)
C8A0.0191 (8)0.0210 (8)0.0166 (7)0.0030 (7)−0.0003 (6)0.0006 (6)
C9A0.0219 (8)0.0287 (9)0.0197 (8)0.0035 (7)0.0021 (7)0.0002 (7)
C10A0.0331 (10)0.0219 (8)0.0236 (8)−0.0068 (8)0.0048 (8)−0.0012 (7)
O1—C11.2390 (19)N2A—C6A1.332 (2)
O2—C61.2354 (19)N2A—C2A1.463 (2)
N1—C11.331 (2)N2A—C5A1.470 (2)
N1—C71.4698 (19)C1A—C2A1.510 (2)
N1—H10.872 (19)C2A—C3A1.530 (3)
N2—C61.3381 (19)C2A—C3B1.607 (4)
N2—C51.4656 (19)C2A—H2A1.0000
N2—C21.469 (2)C2A—H2B1.0000
C1—C21.521 (2)C3A—C4A1.539 (3)
C2—C31.523 (2)C3A—H3C0.9900
C2—H21.0000C3A—H3D0.9900
C3—C41.527 (2)C4A—C5A1.583 (4)
C3—H3A0.9900C4A—H4C0.9900
C3—H3B0.9900C4A—H4D0.9900
C4—C51.523 (2)C3B—C4B1.537 (3)
C4—H4A0.9900C3B—H3E0.9900
C4—H4B0.9900C3B—H3F0.9900
C5—H5A0.9900C4B—C5A1.359 (7)
C5—H5B0.9900C4B—H4E0.9900
C6—C71.533 (2)C4B—H4F0.9900
C7—C81.527 (2)C5A—H5C0.9900
C7—H71.0000C5A—H5D0.9900
C8—C101.526 (2)C5A—H5E0.9900
C8—C91.529 (2)C5A—H5F0.9900
C8—H81.0000C6A—C7A1.535 (2)
C9—H9A0.9800C7A—C8A1.536 (2)
C9—H9B0.9800C7A—H7A1.0000
C9—H9C0.9800C8A—C10A1.525 (2)
C10—H10A0.9800C8A—C9A1.528 (2)
C10—H10B0.9800C8A—H8A1.0000
C10—H10C0.9800C9A—H9D0.9800
O1A—C1A1.2402 (19)C9A—H9E0.9800
O2A—C6A1.230 (2)C9A—H9F0.9800
N1A—C1A1.333 (2)C10A—H10D0.9800
N1A—C7A1.469 (2)C10A—H10E0.9800
N1A—H1A0.916 (19)C10A—H10F0.9800
C1—N1—C7121.45 (13)N2A—C2A—C3B100.7 (3)
C1—N1—H1116.9 (12)C1A—C2A—C3B107.4 (3)
C7—N1—H1121.0 (12)C3A—C2A—C3B15.0 (4)
C6—N2—C5125.23 (13)N2A—C2A—H2A107.1
C6—N2—C2122.52 (13)C1A—C2A—H2A107.1
C5—N2—C2112.22 (12)C3A—C2A—H2A107.1
O1—C1—N1124.88 (14)N2A—C2A—H2B112.8
O1—C1—C2121.83 (13)C1A—C2A—H2B112.7
N1—C1—C2113.28 (13)C3B—C2A—H2B109.8
N2—C2—C1110.11 (12)C2A—C3A—C4A106.77 (18)
N2—C2—C3102.62 (12)C2A—C3A—H3C110.4
C1—C2—C3115.95 (13)C4A—C3A—H3C110.4
N2—C2—H2109.3C2A—C3A—H3D110.4
C1—C2—H2109.3C4A—C3A—H3D110.4
C3—C2—H2109.3H3C—C3A—H3D108.6
C2—C3—C4102.58 (13)C3A—C4A—C5A101.4 (2)
C2—C3—H3A111.3C3A—C4A—H4C111.5
C4—C3—H3A111.3C5A—C4A—H4C111.5
C2—C3—H3B111.3C3A—C4A—H4D111.5
C4—C3—H3B111.3C5A—C4A—H4D111.5
H3A—C3—H3B109.2H4C—C4A—H4D109.3
C5—C4—C3102.61 (12)C4B—C3B—C2A92.4 (3)
C5—C4—H4A111.2C4B—C3B—H3E113.2
C3—C4—H4A111.2C2A—C3B—H3E113.2
C5—C4—H4B111.2C4B—C3B—H3F113.2
C3—C4—H4B111.2C2A—C3B—H3F113.2
H4A—C4—H4B109.2H3E—C3B—H3F110.6
N2—C5—C4102.57 (12)C5A—C4B—C3B114.2 (4)
N2—C5—H5A111.3C5A—C4B—H4E108.7
C4—C5—H5A111.3C3B—C4B—H4E108.7
N2—C5—H5B111.3C5A—C4B—H4F108.7
C4—C5—H5B111.3C3B—C4B—H4F108.7
H5A—C5—H5B109.2H4E—C4B—H4F107.6
O2—C6—N2124.02 (14)C4B—C5A—N2A102.1 (2)
O2—C6—C7123.85 (14)N2A—C5A—C4A101.27 (15)
N2—C6—C7112.11 (13)N2A—C5A—H5C111.5
N1—C7—C8112.07 (12)C4A—C5A—H5C111.5
N1—C7—C6109.31 (12)N2A—C5A—H5D111.5
C8—C7—C6112.84 (13)C4A—C5A—H5D111.5
N1—C7—H7107.5H5C—C5A—H5D109.3
C8—C7—H7107.5C4B—C5A—H5E111.5
C6—C7—H7107.5N2A—C5A—H5E110.3
C10—C8—C7112.67 (13)C4B—C5A—H5F113.5
C10—C8—C9111.19 (13)N2A—C5A—H5F110.7
C7—C8—C9110.87 (13)H5E—C5A—H5F108.7
C10—C8—H8107.3O2A—C6A—N2A123.30 (15)
C7—C8—H8107.3O2A—C6A—C7A120.94 (14)
C9—C8—H8107.3N2A—C6A—C7A115.76 (14)
C8—C9—H9A109.5N1A—C7A—C6A111.64 (13)
C8—C9—H9B109.5N1A—C7A—C8A111.08 (13)
H9A—C9—H9B109.5C6A—C7A—C8A109.98 (13)
C8—C9—H9C109.5N1A—C7A—H7A108.0
H9A—C9—H9C109.5C6A—C7A—H7A108.0
H9B—C9—H9C109.5C8A—C7A—H7A108.0
C8—C10—H10A109.5C10A—C8A—C9A111.84 (14)
C8—C10—H10B109.5C10A—C8A—C7A111.64 (13)
H10A—C10—H10B109.5C9A—C8A—C7A112.04 (13)
C8—C10—H10C109.5C10A—C8A—H8A107.0
H10A—C10—H10C109.5C9A—C8A—H8A107.0
H10B—C10—H10C109.5C7A—C8A—H8A107.0
C1A—N1A—C7A125.26 (13)C8A—C9A—H9D109.5
C1A—N1A—H1A116.0 (12)C8A—C9A—H9E109.5
C7A—N1A—H1A118.0 (12)H9D—C9A—H9E109.5
C6A—N2A—C2A126.07 (13)C8A—C9A—H9F109.5
C6A—N2A—C5A123.44 (14)H9D—C9A—H9F109.5
C2A—N2A—C5A110.25 (13)H9E—C9A—H9F109.5
O1A—C1A—N1A123.44 (14)C8A—C10A—H10D109.5
O1A—C1A—C2A119.79 (14)C8A—C10A—H10E109.5
N1A—C1A—C2A116.76 (13)H10D—C10A—H10E109.5
N2A—C2A—C1A112.62 (13)C8A—C10A—H10F109.5
N2A—C2A—C3A105.04 (15)H10D—C10A—H10F109.5
C1A—C2A—C3A117.37 (17)H10E—C10A—H10F109.5
C7—N1—C1—O1−170.29 (14)C5A—N2A—C2A—C3A18.7 (2)
C7—N1—C1—C211.1 (2)C6A—N2A—C2A—C3B−141.0 (4)
C6—N2—C2—C1−45.57 (18)C5A—N2A—C2A—C3B33.5 (4)
C5—N2—C2—C1136.54 (13)O1A—C1A—C2A—N2A−158.55 (15)
C6—N2—C2—C3−169.60 (13)N1A—C1A—C2A—N2A22.8 (2)
C5—N2—C2—C312.51 (15)O1A—C1A—C2A—C3A−36.4 (2)
O1—C1—C2—N2−143.76 (14)N1A—C1A—C2A—C3A145.00 (17)
N1—C1—C2—N234.95 (18)O1A—C1A—C2A—C3B−48.6 (4)
O1—C1—C2—C3−27.8 (2)N1A—C1A—C2A—C3B132.8 (4)
N1—C1—C2—C3150.87 (14)N2A—C2A—C3A—C4A7.3 (3)
N2—C2—C3—C4−33.24 (14)C1A—C2A—C3A—C4A−118.7 (3)
C1—C2—C3—C4−153.30 (13)C2A—C3A—C4A—C5A−27.8 (3)
C2—C3—C4—C542.04 (15)N2A—C2A—C3B—C4B−40.4 (7)
C6—N2—C5—C4−164.35 (13)C1A—C2A—C3B—C4B−158.4 (5)
C2—N2—C5—C413.47 (16)C2A—C3B—C4B—C5A41.1 (9)
C3—C4—C5—N2−33.83 (15)C3B—C4B—C5A—N2A−23.0 (8)
C5—N2—C6—O25.3 (2)C6A—N2A—C5A—C4B166.1 (4)
C2—N2—C6—O2−172.35 (14)C2A—N2A—C5A—C4B−8.6 (5)
C5—N2—C6—C7−175.76 (13)C6A—N2A—C5A—C4A138.76 (19)
C2—N2—C6—C76.64 (19)C2A—N2A—C5A—C4A−35.9 (2)
C1—N1—C7—C8−175.93 (14)C3A—C4A—C5A—N2A37.7 (3)
C1—N1—C7—C6−50.06 (19)C2A—N2A—C6A—O2A−177.98 (16)
O2—C6—C7—N1−142.09 (14)C5A—N2A—C6A—O2A8.2 (3)
N2—C6—C7—N138.92 (17)C2A—N2A—C6A—C7A1.2 (2)
O2—C6—C7—C8−16.7 (2)C5A—N2A—C6A—C7A−172.63 (15)
N2—C6—C7—C8164.34 (13)C1A—N1A—C7A—C6A−31.1 (2)
N1—C7—C8—C1056.61 (17)C1A—N1A—C7A—C8A−154.21 (15)
C6—C7—C8—C10−67.31 (17)O2A—C6A—C7A—N1A−154.28 (15)
N1—C7—C8—C9−68.72 (16)N2A—C6A—C7A—N1A26.5 (2)
C6—C7—C8—C9167.36 (13)O2A—C6A—C7A—C8A−30.5 (2)
C7A—N1A—C1A—O1A−172.92 (14)N2A—C6A—C7A—C8A150.31 (15)
C7A—N1A—C1A—C2A5.6 (2)N1A—C7A—C8A—C10A53.83 (17)
C6A—N2A—C2A—C1A−26.9 (2)C6A—C7A—C8A—C10A−70.28 (17)
C5A—N2A—C2A—C1A147.63 (14)N1A—C7A—C8A—C9A−72.51 (17)
C6A—N2A—C2A—C3A−155.8 (2)C6A—C7A—C8A—C9A163.39 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1Ai0.872 (19)2.016 (19)2.8734 (17)167.7 (17)
N1A—H1A···O1ii0.916 (19)2.06 (2)2.9710 (17)172.3 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O1A i 0.872 (19)2.016 (19)2.8734 (17)167.7 (17)
N1A—H1A⋯O1ii 0.916 (19)2.06 (2)2.9710 (17)172.3 (17)

Symmetry codes: (i) ; (ii) .

  20 in total

1.  Discovery and activity profiling of thailandepsins A through F, potent histone deacetylase inhibitors, from Burkholderia thailandensis E264.

Authors:  Cheng Wang; Creston J Flemming; Yi-Qiang Cheng
Journal:  Medchemcomm       Date:  2012-08-01       Impact factor: 3.597

2.  High-redundancy draft sequencing of 15 clinical and environmental Burkholderia strains.

Authors:  Sanghamitra Mukhopadhyay; Maureen K Thomason; Shannon Lentz; Nichole Nolan; Kristin Willner; Jay E Gee; Mindy B Glass; Timothy J J Inglis; Adam Merritt; Avram Levy; Shanmuga Sozhamannan; Al Mateczun; Timothy D Read
Journal:  J Bacteriol       Date:  2010-09-24       Impact factor: 3.490

3.  Metabolites from an Antarctic sponge-associated bacterium, Pseudomonas aeruginosa.

Authors:  G S Jayatilake; M P Thornton; A C Leonard; J E Grimwade; B J Baker
Journal:  J Nat Prod       Date:  1996-03       Impact factor: 4.050

4.  Metabolites from the marine-derived fungus Chromocleista sp. isolated from a deep-water sediment sample collected in the Gulf of Mexico.

Authors:  Young Chul Park; Sarath P Gunasekera; Jose V Lopez; Peter J McCarthy; Amy E Wright
Journal:  J Nat Prod       Date:  2006-04       Impact factor: 4.050

5.  Histone deacetylase inhibitors from Burkholderia thailandensis.

Authors:  Paul Klausmeyer; Suzanne M Shipley; Karina M Zuck; Thomas G McCloud
Journal:  J Nat Prod       Date:  2011-10-03       Impact factor: 4.050

6.  Identification of proline-based diketopiperazines in roasted coffee.

Authors:  M Ginz; U H Engelhardt
Journal:  J Agric Food Chem       Date:  2000-08       Impact factor: 5.279

7.  Thailandepsins: bacterial products with potent histone deacetylase inhibitory activities and broad-spectrum antiproliferative activities.

Authors:  Cheng Wang; Leonhard M Henkes; Leah B Doughty; Min He; Difei Wang; Franz-Josef Meyer-Almes; Yi-Qiang Cheng
Journal:  J Nat Prod       Date:  2011-07-27       Impact factor: 4.050

8.  Determination of diketopiperazines of Burkholderia cepacia CF-66 by gas chromatography-mass spectrometry.

Authors:  Jian-Hua Wang; Chun-Shan Quan; Xiao-Hui Qi; Xin Li; Sheng-Di Fan
Journal:  Anal Bioanal Chem       Date:  2010-01-09       Impact factor: 4.142

9.  Quorum-sensing-regulated bactobolin production by Burkholderia thailandensis E264.

Authors:  Mohammad R Seyedsayamdost; Josephine R Chandler; Joshua A V Blodgett; Patricia S Lima; Breck A Duerkop; Ken-Ichi Oinuma; E Peter Greenberg; Jon Clardy
Journal:  Org Lett       Date:  2010-02-19       Impact factor: 6.005

10.  FK228 from Burkholderia thailandensis MSMB43.

Authors:  Xiang-Yang Liu; Cheng Wang; Yi-Qiang Cheng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-23
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.