Literature DB >> 22969639

FK228 from Burkholderia thailandensis MSMB43.

Xiang-Yang Liu1, Cheng Wang, Yi-Qiang Cheng.   

Abstract

FK228 [systematic name: (1S,4S,7Z,10S,16E,21R)-7-ethyl-idene-4,21-di(propan-2-yl)-2-oxa-12,13-dithia-5,8,20,23-tetra-za--bicyclo[8.7.6]tricos-16-ene-3,6,9,19,22-pentone], C(24)H(36)N(4)O(6)S(2), also known as FR901228, depsipeptide, NSC 630176, romidepsin, and marketed as Istodax by Celgene Corporation, is crystallized from ethyl acetate in P2(1) as compared to the absolute configuration of FK228, first crystallized from methanol in P2(1)2(1)2(1) [Shigematsu et al. (1994 ▶). J. Anti-biot.47, 311-314]. A slight difference is observed between the absolute configuration of FK228 and the present structure. The molecular structure is stabilized by intramolecular N-H⋯O hydrogen bonds. In the crystal, molecules are linked via N-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22969639      PMCID: PMC3435793          DOI: 10.1107/S160053681203601X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For diverse natural products, see: Nguyen et al. (2008 ▶); Knappe et al. (2008 ▶); Seyedsayamdost et al. (2010 ▶); Biggins et al. (2011 ▶); Klausmeyer et al. (2011 ▶); Wang et al. (2011 ▶, 2012 ▶). For large-scale genome sequencing, see: Yu et al. (2006 ▶); Mukhopadhyay et al. (2010 ▶); Zhuo et al. (2012 ▶). For the initial discovery of FK228 from Chromobacterium violaceum No. 968 and its crystal structure report, see: Shigematsu et al. (1994 ▶); Ueda, Nakajima, Hori, Fujita et al. (1994 ▶). For the biological activities and mode of action of FK228, see: Furumai et al. (2002 ▶); Ueda, Manda et al. (1994 ▶); Ueda, Nakajima, Hori, Goto & Okuhara (1994 ▶). For biosynthetic studies of FK228, see: Cheng et al. (2007 ▶); Potharla et al. (2011 ▶); Wesener et al. (2011 ▶). For clinical application of FK228, see: Robey et al. (2011 ▶); StatBite (2010 ▶).

Experimental

Crystal data

C24H36N4O6S2 M = 540.69 Monoclinic, a = 9.1085 (2) Å b = 16.2431 (4) Å c = 9.4192 (2) Å β = 92.096 (1)° V = 1392.64 (5) Å3 Z = 2 Cu Kα radiation μ = 2.10 mm−1 T = 100 K 0.26 × 0.14 × 0.07 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: analytical (SADABS; Sheldrick, 2003 ▶) T min = 0.611, T max = 0.867 22577 measured reflections 4918 independent reflections 4859 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.065 S = 1.02 4918 reflections 343 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.15 e Å−3 Absolute structure: Flack (1983 ▶), 2188 Friedel pairs Flack parameter: 0.022 (9) Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681203601X/jj2148sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681203601X/jj2148Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681203601X/jj2148Isup3.cdx Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H36N4O6S2F(000) = 576
Mr = 540.69Dx = 1.289 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ybCell parameters from 999 reflections
a = 9.1085 (2) Åθ = 4.7–69.8°
b = 16.2431 (4) ŵ = 2.10 mm1
c = 9.4192 (2) ÅT = 100 K
β = 92.096 (1)°Block, colourless
V = 1392.64 (5) Å30.26 × 0.14 × 0.07 mm
Z = 2
Bruker SMART APEXII area-detector diffractometer4918 independent reflections
Radiation source: fine-focus sealed tube4859 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
0.50° ω and 0.5 ° φ scansθmax = 69.8°, θmin = 4.7°
Absorption correction: analytical (SADABS; Sheldrick, 2003)h = −10→11
Tmin = 0.611, Tmax = 0.867k = −19→19
22577 measured reflectionsl = −11→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.025H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.065w = 1/[σ2(Fo2) + (0.0447P)2 + 0.2408P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
4918 reflectionsΔρmax = 0.29 e Å3
343 parametersΔρmin = −0.15 e Å3
1 restraintAbsolute structure: Flack (1983), 2188 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.022 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.21741 (4)0.87614 (3)0.41260 (4)0.02391 (9)
S20.21966 (4)0.75561 (3)0.35057 (4)0.02177 (9)
O10.47759 (11)0.86900 (7)−0.17912 (11)0.0166 (2)
O20.54893 (12)0.83426 (7)−0.39718 (11)0.0228 (2)
O30.73140 (12)1.08712 (7)−0.12864 (11)0.0188 (2)
O40.48889 (12)1.02648 (7)0.11054 (12)0.0234 (2)
O50.68455 (11)0.76827 (7)−0.04745 (11)0.0206 (2)
O60.74839 (11)0.82368 (7)0.32442 (11)0.0175 (2)
N10.72350 (14)0.94804 (8)−0.11503 (13)0.0155 (2)
H30.724 (2)0.9060 (13)−0.063 (2)0.019*
N20.70812 (14)0.97489 (8)0.18875 (13)0.0170 (3)
H40.750 (2)0.9394 (13)0.237 (2)0.020*
N30.54236 (14)0.69120 (8)0.09041 (13)0.0153 (2)
H160.467 (2)0.6595 (13)0.099 (2)0.018*
N40.51449 (14)0.83271 (8)0.23715 (14)0.0159 (3)
H180.454 (2)0.8103 (13)0.195 (2)0.019*
C10.37318 (16)0.80077 (9)−0.18177 (16)0.0171 (3)
H10.32470.7979−0.27860.021*
C20.56600 (16)0.87327 (10)−0.28962 (14)0.0168 (3)
C30.68786 (16)0.93675 (10)−0.26594 (15)0.0167 (3)
H20.64880.9905−0.30270.020*
C40.74312 (15)1.02321 (10)−0.05887 (15)0.0157 (3)
C50.78862 (16)1.02503 (9)0.09680 (15)0.0172 (3)
C60.55899 (17)0.97821 (9)0.18570 (15)0.0169 (3)
C70.48646 (16)0.91621 (10)0.28501 (15)0.0171 (3)
H5A0.52810.92340.38390.021*
C80.32175 (17)0.93220 (10)0.28278 (16)0.0200 (3)
H60.28080.91850.18690.024*
H70.30610.99180.29770.024*
C90.05712 (16)0.74578 (10)0.23338 (17)0.0216 (3)
H80.04350.68690.20920.026*
H9−0.02950.76350.28600.026*
C100.06058 (16)0.79491 (11)0.09558 (17)0.0214 (3)
H10−0.03260.78570.04040.026*
H110.06670.85430.11890.026*
C110.18736 (16)0.77249 (10)0.00426 (16)0.0190 (3)
H120.21820.71660.00520.023*
C120.25928 (16)0.82409 (10)−0.07712 (17)0.0190 (3)
H130.23690.8810−0.06870.023*
C130.45645 (17)0.71982 (10)−0.15341 (15)0.0172 (3)
H140.38540.6764−0.12910.021*
H150.50480.7027−0.24110.021*
C140.57163 (16)0.72764 (9)−0.03355 (15)0.0162 (3)
C150.64392 (16)0.70259 (9)0.21230 (15)0.0154 (3)
H170.74510.69160.17920.018*
C160.64070 (16)0.79203 (9)0.26422 (14)0.0153 (3)
C170.82380 (17)0.91592 (10)−0.35219 (16)0.0199 (3)
H190.79000.9098−0.45390.024*
C180.93314 (19)0.98732 (11)−0.34389 (17)0.0274 (4)
H220.88361.0383−0.37420.041*
H211.01450.9761−0.40630.041*
H200.97140.9934−0.24590.041*
C190.89729 (19)0.83572 (11)−0.30681 (18)0.0257 (4)
H240.93700.8410−0.20910.039*
H250.97730.8234−0.37030.039*
H230.82500.7910−0.31180.039*
C200.90281 (18)1.07072 (10)0.14031 (17)0.0230 (3)
H260.95361.10000.06990.028*
C210.9578 (2)1.07966 (13)0.2911 (2)0.0358 (4)
H270.88021.06370.35500.054*
H290.98561.13710.30930.054*
H281.04361.04410.30790.054*
C220.61246 (18)0.63859 (10)0.32827 (17)0.0201 (3)
H300.50520.64020.34750.024*
C230.65029 (19)0.55289 (10)0.27385 (19)0.0253 (3)
H310.59350.54180.18550.038*
H320.62620.51170.34530.038*
H330.75550.55020.25580.038*
C240.6992 (2)0.65666 (11)0.46668 (18)0.0301 (4)
H350.80450.65710.44880.045*
H340.67860.61400.53680.045*
H360.67000.71050.50330.045*
U11U22U33U12U13U23
S10.02086 (19)0.0278 (2)0.02363 (18)0.00080 (16)0.00810 (13)−0.00407 (16)
S20.01743 (17)0.02238 (19)0.02566 (19)0.00194 (15)0.00309 (13)0.00550 (15)
O10.0174 (5)0.0153 (5)0.0171 (5)−0.0017 (4)0.0011 (4)0.0016 (4)
O20.0244 (6)0.0277 (6)0.0161 (5)−0.0058 (5)−0.0005 (4)−0.0013 (5)
O30.0221 (5)0.0140 (5)0.0204 (5)−0.0002 (4)0.0005 (4)0.0020 (4)
O40.0225 (6)0.0182 (6)0.0295 (6)0.0029 (4)−0.0013 (5)0.0046 (5)
O50.0159 (5)0.0223 (6)0.0236 (5)−0.0028 (4)0.0004 (4)0.0032 (4)
O60.0171 (5)0.0176 (5)0.0175 (5)0.0001 (4)−0.0034 (4)−0.0004 (4)
N10.0191 (6)0.0142 (6)0.0132 (6)−0.0004 (5)0.0006 (5)0.0013 (5)
N20.0199 (6)0.0152 (6)0.0157 (6)0.0017 (5)−0.0022 (5)0.0012 (5)
N30.0141 (6)0.0140 (6)0.0179 (6)−0.0013 (5)0.0000 (5)−0.0006 (5)
N40.0139 (6)0.0150 (6)0.0187 (6)−0.0002 (5)−0.0011 (5)−0.0017 (5)
C10.0168 (7)0.0170 (8)0.0174 (7)−0.0040 (6)−0.0028 (5)0.0020 (6)
C20.0189 (7)0.0183 (7)0.0130 (6)0.0034 (6)−0.0021 (5)0.0040 (6)
C30.0181 (7)0.0177 (7)0.0144 (6)−0.0005 (6)−0.0001 (5)0.0015 (6)
C40.0111 (6)0.0171 (7)0.0190 (7)−0.0007 (5)0.0030 (5)0.0001 (6)
C50.0182 (7)0.0141 (7)0.0192 (7)0.0018 (6)0.0004 (5)−0.0011 (6)
C60.0206 (7)0.0128 (7)0.0172 (7)0.0004 (6)0.0010 (6)−0.0048 (6)
C70.0184 (7)0.0171 (7)0.0159 (7)0.0006 (6)0.0010 (5)−0.0021 (6)
C80.0196 (7)0.0167 (7)0.0238 (7)0.0023 (6)0.0033 (6)−0.0011 (6)
C90.0143 (7)0.0229 (9)0.0278 (8)−0.0014 (6)0.0033 (6)0.0025 (7)
C100.0146 (7)0.0220 (8)0.0275 (8)0.0015 (6)−0.0007 (6)0.0041 (7)
C110.0163 (7)0.0173 (8)0.0231 (7)0.0001 (6)−0.0024 (6)0.0012 (6)
C120.0159 (7)0.0161 (7)0.0246 (8)0.0016 (6)−0.0038 (6)0.0022 (6)
C130.0189 (7)0.0170 (7)0.0157 (7)−0.0014 (6)0.0013 (5)−0.0001 (6)
C140.0166 (7)0.0135 (7)0.0185 (7)0.0027 (6)0.0010 (5)−0.0012 (6)
C150.0127 (7)0.0160 (7)0.0173 (7)0.0008 (5)−0.0007 (5)−0.0003 (6)
C160.0164 (7)0.0181 (7)0.0114 (6)−0.0009 (6)0.0014 (5)0.0014 (6)
C170.0196 (7)0.0263 (8)0.0141 (6)−0.0025 (7)0.0017 (5)−0.0025 (6)
C180.0245 (8)0.0333 (10)0.0249 (8)−0.0088 (7)0.0087 (7)−0.0060 (7)
C190.0219 (8)0.0319 (9)0.0235 (8)0.0026 (7)0.0035 (6)−0.0028 (7)
C200.0228 (8)0.0198 (8)0.0259 (8)−0.0017 (6)−0.0038 (6)0.0025 (6)
C210.0375 (10)0.0349 (11)0.0338 (10)−0.0069 (8)−0.0157 (8)−0.0019 (8)
C220.0214 (8)0.0171 (8)0.0215 (7)−0.0006 (6)−0.0021 (6)0.0021 (6)
C230.0248 (8)0.0166 (8)0.0340 (9)0.0021 (6)−0.0072 (7)0.0032 (7)
C240.0458 (11)0.0210 (9)0.0226 (8)−0.0021 (8)−0.0097 (7)0.0059 (7)
S1—C81.8200 (16)C9—H90.9900
S1—S22.0434 (6)C10—C111.510 (2)
S2—C91.8211 (15)C10—H100.9900
O1—C21.3408 (17)C10—H110.9900
O1—C11.4599 (18)C11—C121.325 (2)
O2—C21.2003 (19)C11—H120.9500
O3—C41.2311 (19)C12—H130.9500
O4—C61.2208 (19)C13—C141.518 (2)
O5—C141.2331 (19)C13—H140.9900
O6—C161.2277 (19)C13—H150.9900
N1—C41.340 (2)C15—C161.534 (2)
N1—C31.4580 (18)C15—C221.542 (2)
N1—H30.84 (2)C15—H171.0000
N2—C61.359 (2)C17—C191.519 (2)
N2—C51.413 (2)C17—C181.529 (2)
N2—H40.82 (2)C17—H191.0000
N3—C141.344 (2)C18—H220.9800
N3—C151.4596 (18)C18—H210.9800
N3—H160.87 (2)C18—H200.9800
N4—C161.342 (2)C19—H240.9800
N4—C71.455 (2)C19—H250.9800
N4—H180.76 (2)C19—H230.9800
C1—C121.505 (2)C20—C211.496 (2)
C1—C131.537 (2)C20—H260.9500
C1—H11.0000C21—H270.9800
C2—C31.525 (2)C21—H290.9800
C3—C171.543 (2)C21—H280.9800
C3—H21.0000C22—C231.527 (2)
C4—C51.509 (2)C22—C241.528 (2)
C5—C201.330 (2)C22—H301.0000
C6—C71.540 (2)C23—H310.9800
C7—C81.522 (2)C23—H320.9800
C7—H5A1.0000C23—H330.9800
C8—H60.9900C24—H350.9800
C8—H70.9900C24—H340.9800
C9—C101.525 (2)C24—H360.9800
C9—H80.9900
C8—S1—S2106.04 (5)C11—C12—C1125.93 (15)
C9—S2—S1103.94 (6)C11—C12—H13117.0
C2—O1—C1115.81 (12)C1—C12—H13117.0
C4—N1—C3121.41 (13)C14—C13—C1112.39 (13)
C4—N1—H3120.8 (13)C14—C13—H14109.1
C3—N1—H3117.6 (13)C1—C13—H14109.1
C6—N2—C5120.32 (13)C14—C13—H15109.1
C6—N2—H4118.8 (14)C1—C13—H15109.1
C5—N2—H4120.4 (14)H14—C13—H15107.9
C14—N3—C15119.16 (13)O5—C14—N3121.37 (13)
C14—N3—H16122.0 (13)O5—C14—C13121.48 (13)
C15—N3—H16118.8 (13)N3—C14—C13117.09 (13)
C16—N4—C7123.97 (13)N3—C15—C16110.61 (12)
C16—N4—H18117.8 (15)N3—C15—C22110.05 (12)
C7—N4—H18118.2 (15)C16—C15—C22113.98 (12)
O1—C1—C12105.19 (12)N3—C15—H17107.3
O1—C1—C13109.24 (12)C16—C15—H17107.3
C12—C1—C13116.69 (13)C22—C15—H17107.3
O1—C1—H1108.5O6—C16—N4123.09 (14)
C12—C1—H1108.5O6—C16—C15121.31 (14)
C13—C1—H1108.5N4—C16—C15115.59 (13)
O2—C2—O1124.40 (14)C19—C17—C18110.89 (14)
O2—C2—C3123.47 (13)C19—C17—C3113.19 (13)
O1—C2—C3112.08 (12)C18—C17—C3109.91 (13)
N1—C3—C2111.25 (12)C19—C17—H19107.5
N1—C3—C17112.74 (12)C18—C17—H19107.5
C2—C3—C17111.62 (13)C3—C17—H19107.5
N1—C3—H2106.9C17—C18—H22109.5
C2—C3—H2106.9C17—C18—H21109.5
C17—C3—H2106.9H22—C18—H21109.5
O3—C4—N1123.36 (13)C17—C18—H20109.5
O3—C4—C5121.16 (14)H22—C18—H20109.5
N1—C4—C5115.42 (13)H21—C18—H20109.5
C20—C5—N2123.37 (14)C17—C19—H24109.5
C20—C5—C4119.61 (14)C17—C19—H25109.5
N2—C5—C4116.99 (13)H24—C19—H25109.5
O4—C6—N2122.62 (14)C17—C19—H23109.5
O4—C6—C7123.05 (14)H24—C19—H23109.5
N2—C6—C7114.33 (13)H25—C19—H23109.5
N4—C7—C8109.81 (13)C5—C20—C21125.28 (16)
N4—C7—C6109.72 (11)C5—C20—H26117.4
C8—C7—C6108.94 (12)C21—C20—H26117.4
N4—C7—H5A109.4C20—C21—H27109.5
C8—C7—H5A109.4C20—C21—H29109.5
C6—C7—H5A109.4H27—C21—H29109.5
C7—C8—S1116.36 (11)C20—C21—H28109.5
C7—C8—H6108.2H27—C21—H28109.5
S1—C8—H6108.2H29—C21—H28109.5
C7—C8—H7108.2C23—C22—C24110.22 (14)
S1—C8—H7108.2C23—C22—C15109.06 (13)
H6—C8—H7107.4C24—C22—C15111.79 (13)
C10—C9—S2115.36 (11)C23—C22—H30108.6
C10—C9—H8108.4C24—C22—H30108.6
S2—C9—H8108.4C15—C22—H30108.6
C10—C9—H9108.4C22—C23—H31109.5
S2—C9—H9108.4C22—C23—H32109.5
H8—C9—H9107.5H31—C23—H32109.5
C11—C10—C9113.50 (13)C22—C23—H33109.5
C11—C10—H10108.9H31—C23—H33109.5
C9—C10—H10108.9H32—C23—H33109.5
C11—C10—H11108.9C22—C24—H35109.5
C9—C10—H11108.9C22—C24—H34109.5
H10—C10—H11107.7H35—C24—H34109.5
C12—C11—C10125.57 (15)C22—C24—H36109.5
C12—C11—H12117.2H35—C24—H36109.5
C10—C11—H12117.2H34—C24—H36109.5
C8—S1—S2—C9−90.18 (7)S1—S2—C9—C1065.73 (12)
C2—O1—C1—C12−162.59 (12)S2—C9—C10—C1159.05 (17)
C2—O1—C1—C1371.42 (15)C9—C10—C11—C12−145.87 (15)
C1—O1—C2—O212.5 (2)C10—C11—C12—C1−172.08 (15)
C1—O1—C2—C3−170.18 (12)O1—C1—C12—C11−146.55 (14)
C4—N1—C3—C2−135.83 (14)C13—C1—C12—C11−25.3 (2)
C4—N1—C3—C1797.90 (17)O1—C1—C13—C1443.45 (16)
O2—C2—C3—N1−155.37 (14)C12—C1—C13—C14−75.63 (16)
O1—C2—C3—N127.23 (17)C15—N3—C14—O52.3 (2)
O2—C2—C3—C17−28.5 (2)C15—N3—C14—C13−175.03 (12)
O1—C2—C3—C17154.12 (12)C1—C13—C14—O5−70.20 (18)
C3—N1—C4—O30.7 (2)C1—C13—C14—N3107.10 (15)
C3—N1—C4—C5−176.38 (12)C14—N3—C15—C1668.10 (16)
C6—N2—C5—C20131.38 (16)C14—N3—C15—C22−165.07 (13)
C6—N2—C5—C4−50.66 (19)C7—N4—C16—O6−4.9 (2)
O3—C4—C5—C20−46.7 (2)C7—N4—C16—C15176.20 (12)
N1—C4—C5—C20130.44 (16)N3—C15—C16—O6−152.01 (13)
O3—C4—C5—N2135.23 (15)C22—C15—C16—O683.37 (17)
N1—C4—C5—N2−47.60 (18)N3—C15—C16—N426.90 (17)
C5—N2—C6—O4−3.8 (2)C22—C15—C16—N4−97.72 (15)
C5—N2—C6—C7176.31 (12)N1—C3—C17—C1961.93 (18)
C16—N4—C7—C8−160.22 (13)C2—C3—C17—C19−64.14 (16)
C16—N4—C7—C680.06 (16)N1—C3—C17—C18−62.66 (17)
O4—C6—C7—N4114.64 (16)C2—C3—C17—C18171.27 (12)
N2—C6—C7—N4−65.46 (16)N2—C5—C20—C21−3.5 (3)
O4—C6—C7—C8−5.61 (19)C4—C5—C20—C21178.62 (16)
N2—C6—C7—C8174.30 (12)N3—C15—C22—C2366.98 (16)
N4—C7—C8—S168.66 (14)C16—C15—C22—C23−168.10 (12)
C6—C7—C8—S1−171.15 (10)N3—C15—C22—C24−170.88 (13)
S2—S1—C8—C7−69.44 (12)C16—C15—C22—C24−45.97 (19)
D—H···AD—HH···AD···AD—H···A
N1—H3···O50.84 (2)2.27 (2)3.0123 (18)147.1 (17)
N2—H4···O60.82 (2)2.05 (2)2.7867 (18)149.1 (18)
N3—H16···O3i0.87 (2)2.18 (2)3.0449 (17)175.9 (18)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H3⋯O50.84 (2)2.27 (2)3.0123 (18)147.1 (17)
N2—H4⋯O60.82 (2)2.05 (2)2.7867 (18)149.1 (18)
N3—H16⋯O3i 0.87 (2)2.18 (2)3.0449 (17)175.9 (18)

Symmetry code: (i) .

  21 in total

1.  Discovery and activity profiling of thailandepsins A through F, potent histone deacetylase inhibitors, from Burkholderia thailandensis E264.

Authors:  Cheng Wang; Creston J Flemming; Yi-Qiang Cheng
Journal:  Medchemcomm       Date:  2012-08-01       Impact factor: 3.597

2.  High-redundancy draft sequencing of 15 clinical and environmental Burkholderia strains.

Authors:  Sanghamitra Mukhopadhyay; Maureen K Thomason; Shannon Lentz; Nichole Nolan; Kristin Willner; Jay E Gee; Mindy B Glass; Timothy J J Inglis; Adam Merritt; Avram Levy; Shanmuga Sozhamannan; Al Mateczun; Timothy D Read
Journal:  J Bacteriol       Date:  2010-09-24       Impact factor: 3.490

3.  FR901228, a novel antitumor bicyclic depsipeptide produced by Chromobacterium violaceum No. 968. I. Taxonomy, fermentation, isolation, physico-chemical and biological properties, and antitumor activity.

Authors:  H Ueda; H Nakajima; Y Hori; T Fujita; M Nishimura; T Goto; M Okuhara
Journal:  J Antibiot (Tokyo)       Date:  1994-03       Impact factor: 2.649

4.  Acyldepsipeptide HDAC inhibitor production induced in Burkholderia thailandensis.

Authors:  John B Biggins; Conrad D Gleber; Sean F Brady
Journal:  Org Lett       Date:  2011-02-24       Impact factor: 6.005

5.  Action of FR901228, a novel antitumor bicyclic depsipeptide produced by Chromobacterium violaceum no. 968, on Ha-ras transformed NIH3T3 cells.

Authors:  H Ueda; H Nakajima; Y Hori; T Goto; M Okuhara
Journal:  Biosci Biotechnol Biochem       Date:  1994-09       Impact factor: 2.043

6.  FR901228, a novel antitumor bicyclic depsipeptide produced by Chromobacterium violaceum No. 968. II. Structure determination.

Authors:  N Shigematsu; H Ueda; S Takase; H Tanaka; K Yamamoto; T Tada
Journal:  J Antibiot (Tokyo)       Date:  1994-03       Impact factor: 2.649

7.  Histone deacetylase inhibitors from Burkholderia thailandensis.

Authors:  Paul Klausmeyer; Suzanne M Shipley; Karina M Zuck; Thomas G McCloud
Journal:  J Nat Prod       Date:  2011-10-03       Impact factor: 4.050

8.  Characterization of a gene cluster responsible for the biosynthesis of anticancer agent FK228 in Chromobacterium violaceum No. 968.

Authors:  Yi-Qiang Cheng; Min Yang; Andrea M Matter
Journal:  Appl Environ Microbiol       Date:  2007-03-30       Impact factor: 4.792

9.  Thailandepsins: bacterial products with potent histone deacetylase inhibitory activities and broad-spectrum antiproliferative activities.

Authors:  Cheng Wang; Leonhard M Henkes; Leah B Doughty; Min He; Difei Wang; Franz-Josef Meyer-Almes; Yi-Qiang Cheng
Journal:  J Nat Prod       Date:  2011-07-27       Impact factor: 4.050

10.  Quorum-sensing-regulated bactobolin production by Burkholderia thailandensis E264.

Authors:  Mohammad R Seyedsayamdost; Josephine R Chandler; Joshua A V Blodgett; Patricia S Lima; Breck A Duerkop; Ken-Ichi Oinuma; E Peter Greenberg; Jon Clardy
Journal:  Org Lett       Date:  2010-02-19       Impact factor: 6.005

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  5 in total

1.  Genomics-guided discovery of thailanstatins A, B, and C As pre-mRNA splicing inhibitors and antiproliferative agents from Burkholderia thailandensis MSMB43.

Authors:  Xiangyang Liu; Sreya Biswas; Michael G Berg; Christopher M Antapli; Feng Xie; Qi Wang; Man-Cheng Tang; Gong-Li Tang; Lixin Zhang; Gideon Dreyfuss; Yi-Qiang Cheng
Journal:  J Nat Prod       Date:  2013-03-21       Impact factor: 4.050

2.  Improved production of cytotoxic thailanstatins A and D through metabolic engineering of Burkholderia thailandensis MSMB43 and pilot scale fermentation.

Authors:  Xiangyang Liu; Hui Zhu; Sreya Biswas; Yi-Qiang Cheng
Journal:  Synth Syst Biotechnol       Date:  2016-04-01

3.  Genomics-guided discovery of a new and significantly better source of anticancer natural drug FK228.

Authors:  Xiangyang Liu; Feng Xie; Leah B Doughty; Qi Wang; Lixin Zhang; Xueting Liu; Yi-Qiang Cheng
Journal:  Synth Syst Biotechnol       Date:  2018-11-05

4.  Cyclo-(-l-prolyl-l-valinyl-) from Burkholderia thailandensis MSMB43.

Authors:  Xiang-Yang Liu; Cheng Wang; Yi-Qiang Cheng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-20

5.  Development and application of an efficient recombineering system for Burkholderia glumae and Burkholderia plantarii.

Authors:  Ruijuan Li; Hongbo Shi; Xiaoyu Zhao; Xianqi Liu; Qiong Duan; Chaoyi Song; Hanna Chen; Wentao Zheng; Qiyao Shen; Maoqin Wang; Xue Wang; Kai Gong; Jia Yin; Youming Zhang; Aiying Li; Jun Fu
Journal:  Microb Biotechnol       Date:  2021-06-30       Impact factor: 5.813

  5 in total

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