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Literature DB >> 20870763

High-redundancy draft sequencing of 15 clinical and environmental Burkholderia strains.

Sanghamitra Mukhopadhyay¹, Maureen K Thomason, Shannon Lentz, Nichole Nolan, Kristin Willner, Jay E Gee, Mindy B Glass, Timothy J J Inglis, Adam Merritt, Avram Levy, Shanmuga Sozhamannan, Al Mateczun, Timothy D Read.

Abstract

The Gram-negative Burkholderia genus includes several species of intracellular bacterial pathogens that pose substantial risk to humans. In this study, we have generated draft genome sequences of 15 strains of B. oklahomensis, B. pseudomallei, B. thailandensis, and B. ubonensis to an average sequence read coverage of 25- to 40-fold.

Entities: Species

Mesh：

Substances：
DNA, Bacterial

Year: 2010 PMID： 20870763 PMCID： PMC2981208 DOI： 10.1128/JB.00991-10

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

19 in total

1. Preliminary evaluation of the API 20NE and RapID NF plus systems for rapid identification of Burkholderia pseudomallei and B. mallei.

Authors: Mindy B Glass; Tanja Popovic
Journal: J Clin Microbiol Date: 2005-01 Impact factor: 5.948

2. Genome sequencing in microfabricated high-density picolitre reactors.

Authors: Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal: Nature Date: 2005-07-31 Impact factor: 49.962

3. Pneumonia and septicemia caused by Burkholderia thailandensis in the United States.

Authors: Mindy B Glass; Jay E Gee; Arnold G Steigerwalt; Dominick Cavuoti; Theresa Barton; R Doug Hardy; Daniel Godoy; Brian G Spratt; Thomas A Clark; Patricia P Wilkins
Journal: J Clin Microbiol Date: 2006-10-18 Impact factor: 5.948

4. Burkholderia oklahomensis sp. nov., a Burkholderia pseudomallei-like species formerly known as the Oklahoma strain of Pseudomonas pseudomallei.

Authors: Mindy B Glass; Arnold G Steigerwalt; Jean G Jordan; Patricia P Wilkins; Jay E Gee
Journal: Int J Syst Evol Microbiol Date: 2006-09 Impact factor: 2.747

5. Evaluating Burkholderia pseudomallei Bip proteins as vaccines and Bip antibodies as detection agents.

Authors: Chris Druar; Fei Yu; Jodie L Barnes; Richard T Okinaka; Narisara Chantratita; Steve Beg; Chad W Stratilo; Andrew J Olive; Glenn Soltes; Michelle L Russell; Direk Limmathurotsakul; Robert E Norton; Sally X Ni; William D Picking; Paul J Jackson; Don I H Stewart; Vadim Tsvetnitsky; Wendy L Picking; John W Cherwonogrodzky; Natkunam Ketheesan; Sharon J Peacock; Erik J Wiersma
Journal: FEMS Immunol Med Microbiol Date: 2007-11-11

6. Expanded range of Burkholderia species in Australia.

Authors: Avram Levy; Adam J Merritt; Max Aravena-Roman; Meredith M Hodge; Timothy J J Inglis
Journal: Am J Trop Med Hyg Date: 2008-04 Impact factor: 2.345

7. Comparison of four selective media for the isolation of Burkholderia mallei and Burkholderia pseudomallei.

Authors: Mindy B Glass; Cari A Beesley; Patricia P Wilkins; Alex R Hoffmaster
Journal: Am J Trop Med Hyg Date: 2009-06 Impact factor: 2.345

8. Melioidosis, northeastern Brazil.

Authors: Dionne Bezerra Rolim; Dina Cortez Feitosa Lima Vilar; Anastacio Queiroz Sousa; Iracema Sampaio Miralles; Diana Carmen Almeida de Oliveira; Gerry Harnett; Lyn O'Reilly; Kay Howard; Ian Sampson; Timothy J J Inglis
Journal: Emerg Infect Dis Date: 2005-09 Impact factor: 6.883

9. Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping.

Authors: Jana M U'Ren; James M Schupp; Talima Pearson; Heidie Hornstra; Christine L Clark Friedman; Kimothy L Smith; Rebecca R Leadem Daugherty; Shane D Rhoton; Ben Leadem; Shalamar Georgia; Michelle Cardon; Lynn Y Huynh; David DeShazer; Steven P Harvey; Richard Robison; Daniel Gal; Mark J Mayo; David Wagner; Bart J Currie; Paul Keim
Journal: BMC Microbiol Date: 2007-03-30 Impact factor: 3.605

10. Recovery of a Burkholderia thailandensis-like isolate from an Australian water source.

Authors: Jay E Gee; Mindy B Glass; Ryan T Novak; Daniel Gal; Mark J Mayo; Arnold G Steigerwalt; Patricia P Wilkins; Bart J Currie
Journal: BMC Microbiol Date: 2008-04-02 Impact factor: 3.605

9 in total

1. Use of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis for rapid confirmation of Burkholderia pseudomallei in septicemic melioidosis.

Authors: Timothy J J Inglis; Paul E Healy; Leith J Fremlin; Clayton L Golledge
Journal: Am J Trop Med Hyg Date: 2012-06 Impact factor: 2.345

2. Volatile-sulfur-compound profile distinguishes Burkholderia pseudomallei from Burkholderia thailandensis.

Authors: Timothy J J Inglis; Dorothee R Hahne; Adam J Merritt; Michael W Clarke
Journal: J Clin Microbiol Date: 2015-01-07 Impact factor: 5.948

3. Revised genome sequence of Burkholderia thailandensis MSMB43 with improved annotation.

Authors: Ying Zhuo; Lin Liu; Qi Wang; Xiangyang Liu; Biao Ren; Mei Liu; Peixiang Ni; Yi-Qiang Cheng; Lixin Zhang
Journal: J Bacteriol Date: 2012-09 Impact factor: 3.490

4. Evaluation of recombinant proteins of Burkholderia mallei for serodiagnosis of glanders.

Authors: Vijai Pal; Subodh Kumar; Praveen Malik; Ganga Prasad Rai
Journal: Clin Vaccine Immunol Date: 2012-06-13

5. Comparative metabolic systems analysis of pathogenic Burkholderia.

Authors: Jennifer A Bartell; Phillip Yen; John J Varga; Joanna B Goldberg; Jason A Papin
Journal: J Bacteriol Date: 2013-10-25 Impact factor: 3.490

6. Genomics-guided discovery of thailanstatins A, B, and C As pre-mRNA splicing inhibitors and antiproliferative agents from Burkholderia thailandensis MSMB43.

Authors: Xiangyang Liu; Sreya Biswas; Michael G Berg; Christopher M Antapli; Feng Xie; Qi Wang; Man-Cheng Tang; Gong-Li Tang; Lixin Zhang; Gideon Dreyfuss; Yi-Qiang Cheng
Journal: J Nat Prod Date: 2013-03-21 Impact factor: 4.050