Literature DB >> 22871550

Structural basis for protein synthesis: snapshots of the ribosome in motion.

Jonas Noeske1, Jamie H D Cate.   

Abstract

The ribosome undergoes numerous large-scale conformational changes during protein synthesis, but the molecular basis for these changes have been unclear. Recent cryo-electron microscopic and X-ray crystallographic structures of both the bacterial and eukaryotic ribosome now provide snapshots of the wide range of motions that occur within the ribosome. X-ray crystallographic structures of the ribosome have also pinpointed local deformations in ribosomal RNA that occur when the two ribosomal subunits rotate with respect to each other. These structural results establish the foundation for unraveling the mechanics of the ribosome that are universal, and those that differ in bacteria and eukaryotes.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22871550      PMCID: PMC3513557          DOI: 10.1016/j.sbi.2012.07.011

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  45 in total

1.  Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome.

Authors:  Alexander G Myasnikov; Stefano Marzi; Angelita Simonetti; Anna Maria Giuliodori; Claudio O Gualerzi; Gulnara Yusupova; Marat Yusupov; Bruno P Klaholz
Journal:  Nat Struct Mol Biol       Date:  2005-11-13       Impact factor: 15.369

2.  Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.

Authors:  Ning Gao; Andrey V Zavialov; Wen Li; Jayati Sengupta; Mikel Valle; Richard P Gursky; Måns Ehrenberg; Joachim Frank
Journal:  Mol Cell       Date:  2005-06-10       Impact factor: 17.970

3.  Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements.

Authors:  Andrei Korostelev; Sergei Trakhanov; Martin Laurberg; Harry F Noller
Journal:  Cell       Date:  2006-09-07       Impact factor: 41.582

4.  Structural basis for mRNA and tRNA positioning on the ribosome.

Authors:  Veysel Berk; Wen Zhang; Raj D Pai; Jamie H D Cate; Jamie H Doudna Cate
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-12       Impact factor: 11.205

5.  Structures of modified eEF2 80S ribosome complexes reveal the role of GTP hydrolysis in translocation.

Authors:  Derek J Taylor; Jakob Nilsson; A Rod Merrill; Gregers Rom Andersen; Poul Nissen; Joachim Frank
Journal:  EMBO J       Date:  2007-04-19       Impact factor: 11.598

6.  Observation of intersubunit movement of the ribosome in solution using FRET.

Authors:  Dmitri N Ermolenko; Zigurts K Majumdar; Robyn P Hickerson; P Clint Spiegel; Robert M Clegg; Harry F Noller
Journal:  J Mol Biol       Date:  2007-04-20       Impact factor: 5.469

7.  The cryo-EM structure of a translation initiation complex from Escherichia coli.

Authors:  Gregory S Allen; Andrey Zavialov; Richard Gursky; Måns Ehrenberg; Joachim Frank
Journal:  Cell       Date:  2005-06-03       Impact factor: 41.582

8.  The antibiotic viomycin traps the ribosome in an intermediate state of translocation.

Authors:  Dmitri N Ermolenko; P Clint Spiegel; Zigurts K Majumdar; Robyn P Hickerson; Robert M Clegg; Harry F Noller
Journal:  Nat Struct Mol Biol       Date:  2007-05-21       Impact factor: 15.369

9.  Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors.

Authors:  Sean R Connell; Chie Takemoto; Daniel N Wilson; Hongfei Wang; Kazutaka Murayama; Takaho Terada; Mikako Shirouzu; Maximilian Rost; Martin Schüler; Jan Giesebrecht; Marylena Dabrowski; Thorsten Mielke; Paola Fucini; Shigeyuki Yokoyama; Christian M T Spahn
Journal:  Mol Cell       Date:  2007-03-09       Impact factor: 17.970

10.  Structure of the 70S ribosome complexed with mRNA and tRNA.

Authors:  Maria Selmer; Christine M Dunham; Frank V Murphy; Albert Weixlbaumer; Sabine Petry; Ann C Kelley; John R Weir; V Ramakrishnan
Journal:  Science       Date:  2006-09-07       Impact factor: 47.728

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  18 in total

1.  Fluorescence bimolecular complementation enables facile detection of ribosome assembly defects in Escherichia coli.

Authors:  Himanshu Sharma; Baskaran Anand
Journal:  RNA Biol       Date:  2016-07-07       Impact factor: 4.652

2.  Rotation of the head of the 30S ribosomal subunit during mRNA translocation.

Authors:  Zhuojun Guo; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-27       Impact factor: 11.205

3.  Solid-state NMR enhanced by dynamic nuclear polarization as a novel tool for ribosome structural biology.

Authors:  Ioannis Gelis; Veronika Vitzthum; Neha Dhimole; Marc A Caporini; Andreas Schedlbauer; Diego Carnevale; Sean R Connell; Paola Fucini; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2013-05-21       Impact factor: 2.835

Review 4.  A liaison between mTOR signaling, ribosome biogenesis and cancer.

Authors:  Antonio Gentilella; Sara C Kozma; George Thomas
Journal:  Biochim Biophys Acta       Date:  2015-02-28

5.  Ribosome RNA assembly intermediates visualized in living cells.

Authors:  Jennifer L McGinnis; Kevin M Weeks
Journal:  Biochemistry       Date:  2014-05-12       Impact factor: 3.162

Review 6.  Frameshifting dynamics.

Authors:  Ignacio Tinoco; Hee-Kyung Kim; Shannon Yan
Journal:  Biopolymers       Date:  2013-12       Impact factor: 2.505

7.  The Mammalian Ribo-interactome Reveals Ribosome Functional Diversity and Heterogeneity.

Authors:  Deniz Simsek; Gerald C Tiu; Ryan A Flynn; Gun W Byeon; Kathrin Leppek; Adele F Xu; Howard Y Chang; Maria Barna
Journal:  Cell       Date:  2017-06-01       Impact factor: 41.582

8.  Structure of the large ribosomal subunit from human mitochondria.

Authors:  Alan Brown; Alexey Amunts; Xiao-Chen Bai; Yoichiro Sugimoto; Patricia C Edwards; Garib Murshudov; Sjors H W Scheres; V Ramakrishnan
Journal:  Science       Date:  2014-10-02       Impact factor: 47.728

9.  Story in a sample-the potential (and limitations) of cryo-electron microscopy applied to molecular machines.

Authors:  Joachim Frank
Journal:  Biopolymers       Date:  2013-11       Impact factor: 2.505

10.  Universal and domain-specific sequences in 23S-28S ribosomal RNA identified by computational phylogenetics.

Authors:  Stephen M Doris; Deborah R Smith; Julia N Beamesderfer; Benjamin J Raphael; Judith A Nathanson; Susan A Gerbi
Journal:  RNA       Date:  2015-08-17       Impact factor: 4.942

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