Literature DB >> 22856322

Transient fibril structures facilitating nonenzymatic self-replication.

Boris Rubinov1, Nathaniel Wagner, Maayan Matmor, Oren Regev, Nurit Ashkenasy, Gonen Ashkenasy.   

Abstract

An emerging new direction of research focuses on developing "self-synthesizing materials", those supramolecular structures that can promote their own formation by accelerating the synthesis of building blocks and/or an entire assembly. It was postulated recently that practical design of such systems can benefit from the ability to control the assembly of amphiphilic molecules into nanostructures. We describe here the self-assembly pathway of short amphiphilic peptides into various forms of soluble β-sheet structures--β-plates, fibrils, and hollow nanotubes--and their consequent activity as autocatalysts for the synthesis of monomeric peptides from simpler building blocks. A detailed kinetic analysis of both the self-assembly and self-replication processes allows us to suggest a full model and simulate the replication process, revealing that only specific structures, primarily fibrils that are stable within the solution for a time shorter than a few hours, can be active as catalysts. Interestingly, we have found that such a process also induces fibril reproduction, in a mechanism very similar to the propagation of prion proteins by transmission of misfolded states.

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Year:  2012        PMID: 22856322     DOI: 10.1021/nn302223v

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  16 in total

1.  Novel applications of physical autocatalysis.

Authors:  Andrew J Bissette; Stephen P Fletcher
Journal:  Orig Life Evol Biosph       Date:  2015-02-27       Impact factor: 1.950

2.  Primitive selection of the fittest emerging through functional synergy in nucleopeptide networks.

Authors:  Anil Kumar Bandela; Nathaniel Wagner; Hava Sadihov; Sara Morales-Reina; Agata Chotera-Ouda; Kingshuk Basu; Rivka Cohen-Luria; Andrés de la Escosura; Gonen Ashkenasy
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-02       Impact factor: 11.205

3.  Design of multi-phase dynamic chemical networks.

Authors:  Chenrui Chen; Junjun Tan; Ming-Chien Hsieh; Ting Pan; Jay T Goodwin; Anil K Mehta; Martha A Grover; David G Lynn
Journal:  Nat Chem       Date:  2017-02-27       Impact factor: 24.427

Review 4.  Catalytic peptide assemblies.

Authors:  O Zozulia; M A Dolan; I V Korendovych
Journal:  Chem Soc Rev       Date:  2018-05-21       Impact factor: 54.564

5.  Covalent Linkage and Macrocylization Preserve and Enhance Synergistic Interactions in Catalytic Amyloids.

Authors:  Zsofia Lengyel-Zhand; Liam R Marshall; Maximilian Jung; Megha Jayachandran; Min-Chul Kim; Austin Kriews; Olga V Makhlynets; H Christopher Fry; Armin Geyer; Ivan V Korendovych
Journal:  Chembiochem       Date:  2020-11-06       Impact factor: 3.164

Review 6.  Looked at life from both sides now.

Authors:  Jillian E Smith; Allisandra K Mowles; Anil K Mehta; David G Lynn
Journal:  Life (Basel)       Date:  2014-12-11

7.  Ligand-receptor interaction catalyzes the aggregation of small molecules to induce cell necroptosis.

Authors:  Junfeng Shi; Xuewen Du; Yibing Huang; Jie Zhou; Dan Yuan; Dongdong Wu; Ye Zhang; Richard Haburcak; Irving R Epstein; Bing Xu
Journal:  J Am Chem Soc       Date:  2014-12-26       Impact factor: 15.419

8.  Emergence of native peptide sequences in prebiotic replication networks.

Authors:  Jayanta Nanda; Boris Rubinov; Denis Ivnitski; Rakesh Mukherjee; Elina Shtelman; Yair Motro; Yifat Miller; Nathaniel Wagner; Rivka Cohen-Luria; Gonen Ashkenasy
Journal:  Nat Commun       Date:  2017-09-05       Impact factor: 14.919

9.  Emergence of a New Self-Replicator from a Dynamic Combinatorial Library Requires a Specific Pre-Existing Replicator.

Authors:  Yigit Altay; Meniz Tezcan; Sijbren Otto
Journal:  J Am Chem Soc       Date:  2017-09-22       Impact factor: 15.419

10.  Structural and Spectroscopic Properties of Assemblies of Self-Replicating Peptide Macrocycles.

Authors:  Pim W J M Frederix; Julien Idé; Yigit Altay; Gaël Schaeffer; Mathieu Surin; David Beljonne; Anna S Bondarenko; Thomas L C Jansen; Sijbren Otto; Siewert J Marrink
Journal:  ACS Nano       Date:  2017-07-21       Impact factor: 15.881

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