Literature DB >> 28754943

Design of multi-phase dynamic chemical networks.

Chenrui Chen1, Junjun Tan1, Ming-Chien Hsieh2, Ting Pan1, Jay T Goodwin1, Anil K Mehta1, Martha A Grover2, David G Lynn1.   

Abstract

Template-directed polymerization reactions enable the accurate storage and processing of nature's biopolymer information. This mutualistic relationship of nucleic acids and proteins, a network known as life's central dogma, is now marvellously complex, and the progressive steps necessary for creating the initial sequence and chain-length-specific polymer templates are lost to time. Here we design and construct dynamic polymerization networks that exploit metastable prion cross-β phases. Mixed-phase environments have been used for constructing synthetic polymers, but these dynamic phases emerge naturally from the growing peptide oligomers and create environments suitable both to nucleate assembly and select for ordered templates. The resulting templates direct the amplification of a phase containing only chain-length-specific peptide-like oligomers. Such multi-phase biopolymer dynamics reveal pathways for the emergence, self-selection and amplification of chain-length- and possibly sequence-specific biopolymers.

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Year:  2017        PMID: 28754943     DOI: 10.1038/nchem.2737

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  43 in total

1.  Self-assembly at all scales.

Authors:  George M Whitesides; Bartosz Grzybowski
Journal:  Science       Date:  2002-03-29       Impact factor: 47.728

2.  Prions affect the appearance of other prions: the story of [PIN(+)].

Authors:  I L Derkatch; M E Bradley; J Y Hong; S W Liebman
Journal:  Cell       Date:  2001-07-27       Impact factor: 41.582

3.  Second order catalytic quasispecies yields discontinuous mean fitness at error threshold.

Authors:  Nathaniel Wagner; Emmanuel Tannenbaum; Gonen Ashkenasy
Journal:  Phys Rev Lett       Date:  2010-05-06       Impact factor: 9.161

Review 4.  Self-propagation of pathogenic protein aggregates in neurodegenerative diseases.

Authors:  Mathias Jucker; Lary C Walker
Journal:  Nature       Date:  2013-09-05       Impact factor: 49.962

5.  Self-replicating amphiphilic beta-sheet peptides.

Authors:  Boris Rubinov; Nathaniel Wagner; Hanna Rapaport; Gonen Ashkenasy
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

6.  Prosperity is associated with instability in dynamical networks.

Authors:  Matteo Cavaliere; Sean Sedwards; Corina E Tarnita; Martin A Nowak; Attila Csikász-Nagy
Journal:  J Theor Biol       Date:  2011-09-22       Impact factor: 2.691

7.  Dissipative self-assembly of particles interacting through time-oscillatory potentials.

Authors:  Mario Tagliazucchi; Emily A Weiss; Igal Szleifer
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-23       Impact factor: 11.205

8.  Cross-β Amyloid Nanohybrids Loaded With Cytochrome C Exhibit Superactivity in Organic Solvents.

Authors:  Nidhi Kapil; Ashmeet Singh; Dibyendu Das
Journal:  Angew Chem Int Ed Engl       Date:  2015-04-07       Impact factor: 15.336

9.  Microscopic evidence for liquid-liquid separation in supersaturated CaCO3 solutions.

Authors:  Adam F Wallace; Lester O Hedges; Alejandro Fernandez-Martinez; Paolo Raiteri; Julian D Gale; Glenn A Waychunas; Stephen Whitelam; Jillian F Banfield; James J De Yoreo
Journal:  Science       Date:  2013-08-23       Impact factor: 47.728

Review 10.  Ubiquitous amyloids.

Authors:  Wojciech Pulawski; Umesh Ghoshdastider; Vincenza Andrisano; Slawomir Filipek
Journal:  Appl Biochem Biotechnol       Date:  2012-02-19       Impact factor: 2.926

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  10 in total

1.  Catalytic diversity in self-propagating peptide assemblies.

Authors:  Tolulope O Omosun; Ming-Chien Hsieh; W Seth Childers; Dibyendu Das; Anil K Mehta; Neil R Anthony; Ting Pan; Martha A Grover; Keith M Berland; David G Lynn
Journal:  Nat Chem       Date:  2017-02-27       Impact factor: 24.427

Review 2.  Methods for producing microstructured hydrogels for targeted applications in biology.

Authors:  Cristobal Garcia Garcia; Kristi L Kiick
Journal:  Acta Biomater       Date:  2018-11-20       Impact factor: 8.947

Review 3.  Catalytic peptide assemblies.

Authors:  O Zozulia; M A Dolan; I V Korendovych
Journal:  Chem Soc Rev       Date:  2018-05-21       Impact factor: 54.564

Review 4.  Protometabolism as out-of-equilibrium chemistry.

Authors:  Serge Nader; Lorenzo Sebastianelli; Sheref S Mansy
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2022-05-23       Impact factor: 4.019

5.  Solvent-driven chirality for luminescent self-assembled structures: experiments and theory.

Authors:  Charles Lochenie; Alberto Insuasty; Tommaso Battisti; Luca Pesce; Andrea Gardin; Claudio Perego; Mike Dentinger; Di Wang; Giovanni M Pavan; Alessandro Aliprandi; Luisa De Cola
Journal:  Nanoscale       Date:  2020-10-29       Impact factor: 7.790

6.  Multistep Conformation Selection in Amyloid Assembly.

Authors:  Ming-Chien Hsieh; Chen Liang; Anil K Mehta; David G Lynn; Martha A Grover
Journal:  J Am Chem Soc       Date:  2017-11-15       Impact factor: 15.419

7.  Systems Analysis for Peptide Systems Chemistry.

Authors:  Martha A Grover; Ming-Chien Hsieh; David G Lynn
Journal:  Life (Basel)       Date:  2019-07-01

Review 8.  Hierarchical self-assembly of aromatic peptide conjugates into supramolecular polymers: it takes two to tango.

Authors:  Maëva Coste; Esteban Suárez-Picado; Sébastien Ulrich
Journal:  Chem Sci       Date:  2021-12-10       Impact factor: 9.825

9.  Prebiotically Plausible Autocatalytic Peptide Amyloids.

Authors:  Saroj K Rout; David Rhyner; Roland Riek; Jason Greenwald
Journal:  Chemistry       Date:  2021-12-20       Impact factor: 5.020

10.  Model-driven engineering of supramolecular buffering by multivalency.

Authors:  Tim F E Paffen; Abraham J P Teunissen; Tom F A de Greef; E W Meijer
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-20       Impact factor: 11.205

  10 in total

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