Literature DB >> 32956537

Covalent Linkage and Macrocylization Preserve and Enhance Synergistic Interactions in Catalytic Amyloids.

Zsofia Lengyel-Zhand1, Liam R Marshall1, Maximilian Jung2, Megha Jayachandran1, Min-Chul Kim1, Austin Kriews1, Olga V Makhlynets1, H Christopher Fry3, Armin Geyer2, Ivan V Korendovych1.   

Abstract

The self-assembly of short peptides into catalytic amyloid-like nanomaterials has proven to be a powerful tool in both understanding the evolution of early proteins and identifying new catalysts for practically useful chemical reactions. Here we demonstrate that both parallel and antiparallel arrangements of β-sheets can accommodate metal ions in catalytically productive coordination environments. Moreover, synergistic relationships, identified in catalytic amyloid mixtures, can be captured in macrocyclic and sheet-loop-sheet species, that offer faster rates of assembly and provide more complex asymmetric arrangements of functional groups, thus paving the way for future designs of amyloid-like catalytic proteins. Our findings show how initial catalytic activity in amyloid assemblies can be propagated and improved in more-complex molecules, providing another link in a complex evolutionary chain between short, potentially abiotically produced peptides and modern-day enzymes.
© 2020 Wiley-VCH GmbH.

Entities:  

Keywords:  amyloids; catalysis; peptides; self-assembly; synergistic interactions

Mesh:

Substances:

Year:  2020        PMID: 32956537      PMCID: PMC8009494          DOI: 10.1002/cbic.202000645

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  32 in total

1.  Self-replicating amphiphilic beta-sheet peptides.

Authors:  Boris Rubinov; Nathaniel Wagner; Hanna Rapaport; Gonen Ashkenasy
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

2.  Short Self-Assembling Peptides Are Able to Bind to Copper and Activate Oxygen.

Authors:  Olga V Makhlynets; Pallavi M Gosavi; Ivan V Korendovych
Journal:  Angew Chem Int Ed Engl       Date:  2016-06-08       Impact factor: 15.336

Review 3.  Minimal model systems for beta sheet secondary structure in proteins.

Authors:  S H Gellman
Journal:  Curr Opin Chem Biol       Date:  1998-12       Impact factor: 8.822

4.  Development of a novel catalytic amyloid displaying a metal-dependent ATPase-like activity.

Authors:  Octavio Monasterio; Esteban Nova; Rodrigo Diaz-Espinoza
Journal:  Biochem Biophys Res Commun       Date:  2016-12-03       Impact factor: 3.575

5.  Control of Heme Coordination and Catalytic Activity by Conformational Changes in Peptide-Amphiphile Assemblies.

Authors:  Lee A Solomon; Jacob B Kronenberg; H Christopher Fry
Journal:  J Am Chem Soc       Date:  2017-06-15       Impact factor: 15.419

6.  Zinc-binding structure of a catalytic amyloid from solid-state NMR.

Authors:  Myungwoon Lee; Tuo Wang; Olga V Makhlynets; Yibing Wu; Nicholas F Polizzi; Haifan Wu; Pallavi M Gosavi; Jan Stöhr; Ivan V Korendovych; William F DeGrado; Mei Hong
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-31       Impact factor: 11.205

7.  Macrocyclic design strategies for small, stable parallel beta-sheet scaffolds.

Authors:  Felix Freire; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2009-06-17       Impact factor: 15.419

8.  Discovery of catalytic phages by biocatalytic self-assembly.

Authors:  Yoshiaki Maeda; Nadeem Javid; Krystyna Duncan; Louise Birchall; Kirsty F Gibson; Daniel Cannon; Yuka Kanetsuki; Charles Knapp; Tell Tuttle; Rein V Ulijn; Hiroshi Matsui
Journal:  J Am Chem Soc       Date:  2014-10-29       Impact factor: 15.419

9.  Amyloid and the origin of life: self-replicating catalytic amyloids as prebiotic informational and protometabolic entities.

Authors:  Carl Peter J Maury
Journal:  Cell Mol Life Sci       Date:  2018-03-17       Impact factor: 9.261

10.  De novo design of a non-local β-sheet protein with high stability and accuracy.

Authors:  Enrique Marcos; Tamuka M Chidyausiku; Andrew C McShan; Thomas Evangelidis; Santrupti Nerli; Lauren Carter; Lucas G Nivón; Audrey Davis; Gustav Oberdorfer; Konstantinos Tripsianes; Nikolaos G Sgourakis; David Baker
Journal:  Nat Struct Mol Biol       Date:  2018-10-29       Impact factor: 15.369

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  1 in total

Review 1.  Catalytic amyloids: Is misfolding folding?

Authors:  Liam R Marshall; Ivan V Korendovych
Journal:  Curr Opin Chem Biol       Date:  2021-08-20       Impact factor: 8.972

  1 in total

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