Literature DB >> 22843392

Cellulase processivity.

David B Wilson1, Maxim Kostylev.   

Abstract

There are two types of processive cellulases, exocellulases and processive endoglucanases. There are also two classes of exocellulases, ones that attack the reducing ends of cellulose chains and ones that attack the nonreducing ends. There are a number of ways of assaying processivity but none of them are ideal. It appears that exocellulases, all of which have their active sites in a tunnel, couple movement along a cellulose chain with cleavage of cellobiose from the end of the cellulose molecule. There are two sets of structures that suggest how an exocellulase might move along a cellulose chain. For family 48 exocellulases there are two different ways that a chain can be bound in the active site while for family 6 exocellulases there are several different ligand-bound structures. Site-directed mutagenesis of Thermobifida fusca exocellulases Cel48A and Cel6B and the processive endoglucanase Cel9A have identified some mutations that increase processivity and some that decrease processivity. In addition a mutation in Cel6B was identified that appears to allow the mutant enzyme to move along a cellulose chain in the absence of cleavage.

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Year:  2012        PMID: 22843392      PMCID: PMC4086159          DOI: 10.1007/978-1-61779-956-3_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  23 in total

1.  Structural basis for ligand binding and processivity in cellobiohydrolase Cel6A from Humicola insolens.

Authors:  Annabelle Varrot; Torben P Frandsen; Ingemar von Ossowski; Viviane Boyer; Sylvain Cottaz; Hugues Driguez; Martin Schülein; Gideon J Davies
Journal:  Structure       Date:  2003-07       Impact factor: 5.006

2.  Three-dimensional structure of cellobiohydrolase II from Trichoderma reesei.

Authors:  J Rouvinen; T Bergfors; T Teeri; J K Knowles; T A Jones
Journal:  Science       Date:  1990-07-27       Impact factor: 47.728

3.  A kinetic model for the burst phase of processive cellulases.

Authors:  Eigil Praestgaard; Jens Elmerdahl; Leigh Murphy; Søren Nymand; K C McFarland; Kim Borch; Peter Westh
Journal:  FEBS J       Date:  2011-03-28       Impact factor: 5.542

4.  The three-dimensional crystal structure of the catalytic core of cellobiohydrolase I from Trichoderma reesei.

Authors:  C Divne; J Ståhlberg; T Reinikainen; L Ruohonen; G Pettersson; J K Knowles; T T Teeri; T A Jones
Journal:  Science       Date:  1994-07-22       Impact factor: 47.728

5.  Cello-oligosaccharide hydrolysis by cellobiohydrolase II from Trichoderma reesei. Association and rate constants derived from an analysis of progress curves.

Authors:  V Harjunpää; A Teleman; A Koivula; L Ruohonen; T T Teeri; O Teleman; T Drakenberg
Journal:  Eur J Biochem       Date:  1996-09-15

6.  Processive endoglucanases mediate degradation of cellulose by Saccharophagus degradans.

Authors:  Brian J Watson; Haitao Zhang; Atkinson G Longmire; Young Hwan Moon; Steven W Hutcheson
Journal:  J Bacteriol       Date:  2009-07-17       Impact factor: 3.490

7.  Identification of two functionally different classes of exocellulases.

Authors:  B K Barr; Y L Hsieh; B Ganem; D B Wilson
Journal:  Biochemistry       Date:  1996-01-16       Impact factor: 3.162

8.  Processivity, synergism, and substrate specificity of Thermobifida fusca Cel6B.

Authors:  Thu V Vuong; David B Wilson
Journal:  Appl Environ Microbiol       Date:  2009-09-04       Impact factor: 4.792

9.  Processivity, substrate binding, and mechanism of cellulose hydrolysis by Thermobifida fusca Cel9A.

Authors:  Yongchao Li; Diana C Irwin; David B Wilson
Journal:  Appl Environ Microbiol       Date:  2007-03-16       Impact factor: 4.792

10.  Processive action of cellobiohydrolase Cel7A from Trichoderma reesei is revealed as 'burst' kinetics on fluorescent polymeric model substrates.

Authors:  Kalle Kipper; Priit Väljamäe; Gunnar Johansson
Journal:  Biochem J       Date:  2005-01-15       Impact factor: 3.857

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  16 in total

1.  Slow Off-rates and Strong Product Binding Are Required for Processivity and Efficient Degradation of Recalcitrant Chitin by Family 18 Chitinases.

Authors:  Mihhail Kurašin; Silja Kuusk; Piret Kuusk; Morten Sørlie; Priit Väljamäe
Journal:  J Biol Chem       Date:  2015-10-14       Impact factor: 5.157

2.  Kinetics of cellobiohydrolase (Cel7A) variants with lowered substrate affinity.

Authors:  Jeppe Kari; Johan Olsen; Kim Borch; Nicolaj Cruys-Bagger; Kenneth Jensen; Peter Westh
Journal:  J Biol Chem       Date:  2014-09-30       Impact factor: 5.157

Review 3.  Cellulolytic and Xylanolytic Enzymes from Yeasts: Properties and Industrial Applications.

Authors:  Muhammad Sohail; Noora Barzkar; Philippe Michaud; Saeid Tamadoni Jahromi; Olga Babich; Stanislav Sukhikh; Rakesh Das; Reza Nahavandi
Journal:  Molecules       Date:  2022-06-12       Impact factor: 4.927

4.  Periplasmic Cytophaga hutchinsonii Endoglucanases Are Required for Use of Crystalline Cellulose as the Sole Source of Carbon and Energy.

Authors:  Yongtao Zhu; Lanlan Han; Kathleen L Hefferon; Nicholas R Silvaggi; David B Wilson; Mark J McBride
Journal:  Appl Environ Microbiol       Date:  2016-07-15       Impact factor: 4.792

5.  Proteomics-based metabolic modeling and characterization of the cellulolytic bacterium Thermobifida fusca.

Authors:  Niti Vanee; J Paul Brooks; Victor Spicer; Dmitriy Shamshurin; Oleg Krokhin; John A Wilkins; Yu Deng; Stephen S Fong
Journal:  BMC Syst Biol       Date:  2014-08-13

6.  Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis.

Authors:  Jennifer Hiras; Yu-Wei Wu; Kai Deng; Carrie D Nicora; Joshua T Aldrich; Dario Frey; Sebastian Kolinko; Errol W Robinson; Jon M Jacobs; Paul D Adams; Trent R Northen; Blake A Simmons; Steven W Singer
Journal:  mBio       Date:  2016-08-23       Impact factor: 7.867

7.  Reassembly and co-crystallization of a family 9 processive endoglucanase from its component parts: structural and functional significance of the intermodular linker.

Authors:  Svetlana Petkun; Inna Rozman Grinberg; Raphael Lamed; Sadanari Jindou; Tal Burstein; Oren Yaniv; Yuval Shoham; Linda J W Shimon; Edward A Bayer; Felix Frolow
Journal:  PeerJ       Date:  2015-09-15       Impact factor: 2.984

Review 8.  Actinomycetes: A Source of Lignocellulolytic Enzymes.

Authors:  Anita Saini; Neeraj K Aggarwal; Anuja Sharma; Anita Yadav
Journal:  Enzyme Res       Date:  2015-12-17

9.  Recombinant expression of thermostable processive MtEG5 endoglucanase and its synergism with MtLPMO from Myceliophthora thermophila during the hydrolysis of lignocellulosic substrates.

Authors:  Anthi Karnaouri; Madhu Nair Muraleedharan; Maria Dimarogona; Evangelos Topakas; Ulrika Rova; Mats Sandgren; Paul Christakopoulos
Journal:  Biotechnol Biofuels       Date:  2017-05-15       Impact factor: 6.040

10.  Fine-Tuned Enzymatic Hydrolysis of Organosolv Pretreated Forest Materials for the Efficient Production of Cellobiose.

Authors:  Anthi Karnaouri; Evangelos Topakas; Leonidas Matsakas; Ulrika Rova; Paul Christakopoulos
Journal:  Front Chem       Date:  2018-04-19       Impact factor: 5.221

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