Literature DB >> 22842661

Genomic insights into the marine sponge microbiome.

Ute Hentschel1, Jörn Piel, Sandie M Degnan, Michael W Taylor.   

Abstract

Marine sponges (phylum Porifera) often contain dense and diverse microbial communities, which can constitute up to 35% of the sponge biomass. The genome of one sponge, Amphimedon queenslandica, was recently sequenced, and this has provided new insights into the origins of animal evolution. Complementary efforts to sequence the genomes of uncultivated sponge symbionts have yielded the first glimpse of how these intimate partnerships are formed. The remarkable microbial and chemical diversity of the sponge-microorganism association, coupled with its postulated antiquity, makes sponges important model systems for the study of metazoan host-microorganism interactions, and their evolution, as well as for enabling access to biotechnologically important symbiont-derived natural products. In this Review, we discuss our current understanding of the interactions between marine sponges and their microbial symbiotic consortia, and highlight recent insights into these relationships from genomic studies.

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Year:  2012        PMID: 22842661     DOI: 10.1038/nrmicro2839

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  123 in total

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Authors:  Siamon Gordon
Journal:  Cell       Date:  2002-12-27       Impact factor: 41.582

2.  Discovery of the novel candidate phylum "Poribacteria" in marine sponges.

Authors:  Lars Fieseler; Matthias Horn; Michael Wagner; Ute Hentschel
Journal:  Appl Environ Microbiol       Date:  2004-06       Impact factor: 4.792

3.  Hydrophobicity: an ancient damage-associated molecular pattern that initiates innate immune responses.

Authors:  Seung-Yong Seong; Polly Matzinger
Journal:  Nat Rev Immunol       Date:  2004-06       Impact factor: 53.106

Review 4.  Biosynthesis of polyketides by trans-AT polyketide synthases.

Authors:  Jörn Piel
Journal:  Nat Prod Rep       Date:  2010-05-12       Impact factor: 13.423

5.  Differential gene expression in a marine sponge in relation to its symbiotic state.

Authors:  Laura Steindler; Silvia Schuster; Micha Ilan; Adi Avni; Carlo Cerrano; Sven Beer
Journal:  Mar Biotechnol (NY)       Date:  2007-07-13       Impact factor: 3.619

Review 6.  Marine viruses--major players in the global ecosystem.

Authors:  Curtis A Suttle
Journal:  Nat Rev Microbiol       Date:  2007-10       Impact factor: 60.633

7.  Accurate determination of microbial diversity from 454 pyrosequencing data.

Authors:  Christopher Quince; Anders Lanzén; Thomas P Curtis; Russell J Davenport; Neil Hall; Ian M Head; L Fiona Read; William T Sloan
Journal:  Nat Methods       Date:  2009-08-09       Impact factor: 28.547

8.  Meeting report: 1st international symposium on sponge microbiology.

Authors:  Michael W Taylor; Russell T Hill; Ute Hentschel
Journal:  Mar Biotechnol (NY)       Date:  2011-07-20       Impact factor: 3.619

9.  Functional genomic analysis of an uncultured δ-proteobacterium in the sponge Cymbastela concentrica.

Authors:  Michael Yizhe Liu; Staffan Kjelleberg; Torsten Thomas
Journal:  ISME J       Date:  2010-09-02       Impact factor: 10.302

10.  Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage.

Authors:  Rashel V Grindberg; Thomas Ishoey; Dumitru Brinza; Eduardo Esquenazi; R Cameron Coates; Wei-ting Liu; Lena Gerwick; Pieter C Dorrestein; Pavel Pevzner; Roger Lasken; William H Gerwick
Journal:  PLoS One       Date:  2011-04-12       Impact factor: 3.240

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  185 in total

1.  The isolation and characterization of actinobacteria from dominant benthic macroinvertebrates endemic to Lake Baikal.

Authors:  Denis Axenov-Gribanov; Yuriy Rebets; Bogdan Tokovenko; Irina Voytsekhovskaya; Maxim Timofeyev; Andriy Luzhetskyy
Journal:  Folia Microbiol (Praha)       Date:  2015-09-07       Impact factor: 2.099

Review 2.  Leveraging ecological theory to guide natural product discovery.

Authors:  Michael J Smanski; Daniel C Schlatter; Linda L Kinkel
Journal:  J Ind Microbiol Biotechnol       Date:  2015-10-05       Impact factor: 3.346

3.  Endosymbiotic origin and differential loss of eukaryotic genes.

Authors:  Chuan Ku; Shijulal Nelson-Sathi; Mayo Roettger; Filipa L Sousa; Peter J Lockhart; David Bryant; Einat Hazkani-Covo; James O McInerney; Giddy Landan; William F Martin
Journal:  Nature       Date:  2015-08-19       Impact factor: 49.962

4.  Insights into the lifestyle of uncultured bacterial natural product factories associated with marine sponges.

Authors:  Gerald Lackner; Eike Edzard Peters; Eric J N Helfrich; Jörn Piel
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-03       Impact factor: 11.205

5.  A New N-Acyl Homoserine Lactone Synthase in an Uncultured Symbiont of the Red Sea Sponge Theonella swinhoei.

Authors:  Maya Britstein; Giulia Devescovi; Kim M Handley; Assaf Malik; Markus Haber; Kumar Saurav; Roberta Teta; Valeria Costantino; Ilia Burgsdorf; Jack A Gilbert; Noa Sher; Vittorio Venturi; Laura Steindler
Journal:  Appl Environ Microbiol       Date:  2015-12-11       Impact factor: 4.792

Review 6.  Merging chemical ecology with bacterial genome mining for secondary metabolite discovery.

Authors:  Maria I Vizcaino; Xun Guo; Jason M Crawford
Journal:  J Ind Microbiol Biotechnol       Date:  2013-10-15       Impact factor: 3.346

7.  MetaBMF: a scalable binning algorithm for large-scale reference-free metagenomic studies.

Authors:  Terry Ma; Di Xiao; Xin Xing
Journal:  Bioinformatics       Date:  2020-01-15       Impact factor: 6.937

8.  Archaeal communities of low and high microbial abundance sponges inhabiting the remote western Indian Ocean island of Mayotte.

Authors:  Ana Rita Moura Polónia; Daniel Francis Richard Cleary; Anne Gauvin-Bialecki; Nicole Joy de Voogd
Journal:  Antonie Van Leeuwenhoek       Date:  2020-12-28       Impact factor: 2.271

9.  Sponge Prokaryote Communities in Taiwanese Coral Reef and Shallow Hydrothermal Vent Ecosystems.

Authors:  F J R C Coelho; D F R Cleary; N C M Gomes; A R M Pólonia; Y M Huang; L-L Liu; N J de Voogd
Journal:  Microb Ecol       Date:  2017-07-11       Impact factor: 4.552

10.  Microbial and Functional Biodiversity Patterns in Sponges that Accumulate Bromopyrrole Alkaloids Suggest Horizontal Gene Transfer of Halogenase Genes.

Authors:  Cintia P J Rua; Louisi S de Oliveira; Adriana Froes; Diogo A Tschoeke; Ana Carolina Soares; Luciana Leomil; Gustavo B Gregoracci; Ricardo Coutinho; Eduardo Hajdu; Cristiane C Thompson; Roberto G S Berlinck; Fabiano L Thompson
Journal:  Microb Ecol       Date:  2018-03-15       Impact factor: 4.552

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