Literature DB >> 33369710

Archaeal communities of low and high microbial abundance sponges inhabiting the remote western Indian Ocean island of Mayotte.

Ana Rita Moura Polónia1, Daniel Francis Richard Cleary2, Anne Gauvin-Bialecki3, Nicole Joy de Voogd4,5.   

Abstract

Marine sponges are abundant and ecologically important components of coral reefs and have been shown to harbour exceptionally high microbial densities, which can differ substantially among sponge species. However, this dichotomy between high and low microbial abundance (HMA, LMA) sponges is still not fully understood, particularly as concerns the archaeal community. This study aims to fill this gap by analysing (using 454-pyrosequencing of the 16S rRNA gene) how the archaeal community varies among known LMA (Stylissa carteri, and Stylissa massa), known HMA (Hyrtios erectus and Xestospongia testudinaria) and unknown HMA/LMA status sponge species (Ectyoplasia coccinea, Paratetilla bacca and Petrosia aff. spheroida) collected in a remote location in which very few sponge microbial composition studies have been previously performed (Mayotte, Comores archipelago, France) and comparing the results with those reported in four other geographical areas. Based on archaeal community composition, the known LMA sponges formed a distinct cluster together with Paratetilla bacca, Ectyoplasia coccinea and seawater while the known HMA sponge X. testudinaria formed a cluster with Petrosia aff. spheroida. The known HMA sponge H. erectus, in turn, had an intermediate archaeal community between HMA sponges and sediment samples. In addition to the above, we also showed significant compositional congruence between archaeal and bacterial communities sampled from the same sponge individuals. HMA sponges were mainly dominated by members assigned to the genus Nitrosopumilus while LMA sponges were mainly dominated by members assigned to the genus Cenarchaeum. In general, there was no clear difference in richness between HMA and LMA sponges. Evenness, however, was higher in HMA than LMA sponges. Whilst the present study corroborates some of the traits commonly associated with the HMA-LMA dichotomy (higher evenness in Mayotte HMA sponges), this was not consistent across geographical areas showing that more research is needed to fully understand the HMA/LMA dichotomy as concerns Archaea.

Entities:  

Keywords:  Cenarchaeum; Coral reef; Nitrosopumilus; Pyrosequencing

Year:  2020        PMID: 33369710     DOI: 10.1007/s10482-020-01503-5

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


  51 in total

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Journal:  FEMS Microbiol Ecol       Date:  2014-11-10       Impact factor: 4.194

2.  Removing environmental sources of variation to gain insight on symbionts vs. transient microbes in high and low microbial abundance sponges.

Authors:  Andrea Blanquer; Maria J Uriz; Pierre E Galand
Journal:  Environ Microbiol       Date:  2013-10-03       Impact factor: 5.491

3.  Composition and Predictive Functional Analysis of Bacterial Communities in Seawater, Sediment and Sponges in the Spermonde Archipelago, Indonesia.

Authors:  Daniel F R Cleary; Nicole J de Voogd; Ana R M Polónia; Rossana Freitas; Newton C M Gomes
Journal:  Microb Ecol       Date:  2015-06-14       Impact factor: 4.552

4.  Autotrophic ammonia oxidation at low pH through urea hydrolysis.

Authors:  S A Burton; J I Prosser
Journal:  Appl Environ Microbiol       Date:  2001-07       Impact factor: 4.792

5.  Physiology, phylogeny and in situ evidence for bacterial and archaeal nitrifiers in the marine sponge Aplysina aerophoba.

Authors:  Kristina Bayer; Susanne Schmitt; Ute Hentschel
Journal:  Environ Microbiol       Date:  2008-03-23       Impact factor: 5.491

6.  Quantification of bacterial and archaeal symbionts in high and low microbial abundance sponges using real-time PCR.

Authors:  Kristina Bayer; Janine Kamke; Ute Hentschel
Journal:  FEMS Microbiol Ecol       Date:  2014-07-09       Impact factor: 4.194

7.  QIIME allows analysis of high-throughput community sequencing data.

Authors:  J Gregory Caporaso; Justin Kuczynski; Jesse Stombaugh; Kyle Bittinger; Frederic D Bushman; Elizabeth K Costello; Noah Fierer; Antonio Gonzalez Peña; Julia K Goodrich; Jeffrey I Gordon; Gavin A Huttley; Scott T Kelley; Dan Knights; Jeremy E Koenig; Ruth E Ley; Catherine A Lozupone; Daniel McDonald; Brian D Muegge; Meg Pirrung; Jens Reeder; Joel R Sevinsky; Peter J Turnbaugh; William A Walters; Jeremy Widmann; Tanya Yatsunenko; Jesse Zaneveld; Rob Knight
Journal:  Nat Methods       Date:  2010-04-11       Impact factor: 28.547

8.  Pyrosequencing characterization of the microbiota from Atlantic intertidal marine sponges reveals high microbial diversity and the lack of co-occurrence patterns.

Authors:  Anoop Alex; Agostinho Antunes
Journal:  PLoS One       Date:  2015-05-20       Impact factor: 3.240

9.  Host Specificity for Bacterial, Archaeal and Fungal Communities Determined for High- and Low-Microbial Abundance Sponge Species in Two Genera.

Authors:  Maryam Chaib De Mares; Detmer Sipkema; Sixing Huang; Boyke Bunk; Jörg Overmann; Jan Dirk van Elsas
Journal:  Front Microbiol       Date:  2017-12-20       Impact factor: 5.640

10.  The sponge microbiome within the greater coral reef microbial metacommunity.

Authors:  Daniel F R Cleary; Thomas Swierts; Francisco J R C Coelho; Ana R M Polónia; Yusheng M Huang; Marina R S Ferreira; Sumaitt Putchakarn; Luis Carvalheiro; Esther van der Ent; Jinn-Pyng Ueng; Newton C M Gomes; Nicole J de Voogd
Journal:  Nat Commun       Date:  2019-04-09       Impact factor: 14.919

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  1 in total

Review 1.  Ammonia-oxidizing archaea in biological interactions.

Authors:  Jong-Geol Kim; Khaled S Gazi; Samuel Imisi Awala; Man-Young Jung; Sung-Keun Rhee
Journal:  J Microbiol       Date:  2021-02-23       Impact factor: 3.422

  1 in total

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