Literature DB >> 21425285

Electronic ground states and vibrational frequency shifts of diatomic ligands in heme adducts.

Yang Liu1, Huai Sun.   

Abstract

DFT calculations were carried out to study heme complexes with diatomic ligand (CO, NO, or O(2)) and trans-imidazole ligand. The optimized electronic ground states of CO, NO, and O(2) adducts are singlet, doublet, and open-shell singlet, respectively. For O(2) adduct, the open-shell singlet is slightly lower in energy than the close-shell singlet. However, important differences are found in optimized structures and vibrational frequencies. Particularly, the trans-imidazole-induced frequency up-shift of the Fe-O(O) stretching mode can be predicted only with the open-shell singlet as ground state. An analysis of normal modes confirms that the up-shifts in the bent (NO and O(2) ) adducts are mainly due to mixing of Fe-X(O) stretching mode with Fe-X-O bending coordinate. Our study of binding mechanism indicates that a secondary source of the upshifts is the diminished weakening of the Fe-X(O) bonds. The Fe-X(O) bond strengths are modulated by σ competition mechanism, which weakens the Fe-X(O) bond and σ-π cooperation mechanism, which only exists in the bent adducts and enforce the Fe-X(O) bond. -
Copyright © 2010 Wiley Periodicals, Inc.

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Year:  2010        PMID: 21425285     DOI: 10.1002/jcc.21709

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  8 in total

1.  Quantum chemical DFT study of the interaction between molecular oxygen and FeN₄ complexes, and effect of the macrocyclic ligand.

Authors:  Adilson Luís Pereira Silva; Luciano Farias de Almeida; Aldaléa Lopes Brandes Marques; Hawbertt Rocha Costa; Auro Atsushi Tanaka; Albérico Borges Ferreira da Silva; Jaldyr de Jesus Gomes Varela
Journal:  J Mol Model       Date:  2014-02-25       Impact factor: 1.810

2.  Density functional theory study of interactions between carbon monoxide and iron tetraaza macrocyclic complexes, FeTXTAA (X = -Cl, -OH, -OCH3, -NH2, and -NO2).

Authors:  Isaias de Matos Mourão Neto; Adilson Luís Pereira Silva; Auro Atsushi Tanaka; Jaldyr de Jesus Gomes Varela
Journal:  J Mol Model       Date:  2017-02-09       Impact factor: 1.810

Review 3.  Ambidentate H-bonding of NO and O2 in heme proteins.

Authors:  Thomas G Spiro; Alexandra V Soldatova
Journal:  J Inorg Biochem       Date:  2012-06-01       Impact factor: 4.155

4.  CO, NO and O2 as Vibrational Probes of Heme Protein Interactions.

Authors:  Thomas G Spiro; Alexandra V Soldatova; Gurusamy Balakrishnan
Journal:  Coord Chem Rev       Date:  2012-06-06       Impact factor: 22.315

5.  Electronic structure and ligand vibrations in FeNO, CoNO, and FeOO porphyrin adducts.

Authors:  Alexandra V Soldatova; Mohammed Ibrahim; Thomas G Spiro
Journal:  Inorg Chem       Date:  2013-06-13       Impact factor: 5.165

6.  A Plasmonic Gold Nanostar Theranostic Probe for In Vivo Tumor Imaging and Photothermal Therapy.

Authors:  Yang Liu; Jeffrey R Ashton; Everett J Moding; Hsiangkuo Yuan; Janna K Register; Andrew M Fales; Jaeyeon Choi; Melodi J Whitley; Xiaoguang Zhao; Yi Qi; Yan Ma; Ganesan Vaidyanathan; Michael R Zalutsky; David G Kirsch; Cristian T Badea; Tuan Vo-Dinh
Journal:  Theranostics       Date:  2015-05-23       Impact factor: 11.556

Review 7.  Plasmonic gold nanostars for multi-modality sensing and diagnostics.

Authors:  Yang Liu; Hsiangkuo Yuan; Farrell R Kersey; Janna K Register; Matthew C Parrott; Tuan Vo-Dinh
Journal:  Sensors (Basel)       Date:  2015-02-05       Impact factor: 3.576

8.  Multifunctional gold nanostars for molecular imaging and cancer therapy.

Authors:  Yang Liu; Hsiangkuo Yuan; Andrew M Fales; Janna K Register; Tuan Vo-Dinh
Journal:  Front Chem       Date:  2015-08-12       Impact factor: 5.221

  8 in total

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