Literature DB >> 22807836

Butane-1,4-diyl bis-(pyridine-3-carboxyl-ate).

Javier Vallejos, Iván Brito, Alejandro Cárdenas, Michael Bolte.   

Abstract

Mol-ecules of the title compound (alternative name: butane-1,4-diyl dinicotinate), C(16)H(16)N(2)O(4), lie on a inversion centre, located at the mid-point of the central C-C bond of the aliphatic chain, giving one half-mol-ecule per asymmetric unit. The butane chain adopts an all-trans conformation. The dihedral angle between the mean plane of the butane-3-carboxyl-ate group [for the non-H atoms, maximum deviation = 0.0871 (15) Å] and the pyridine ring is 10.83 (7)°. In the crystal, mol-ecules lie in planes parallel to (122). The structure features weak π-π inter-actions with a centroid-centroid distance of 3.9281 (11) Å.

Entities:  

Year:  2012        PMID: 22807836      PMCID: PMC3393279          DOI: 10.1107/S160053681202260X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of compounds with related ligands, see: Brito et al. (2010 ▶, 2011 ▶).

Experimental

Crystal data

C16H16N2O4 M = 300.31 Triclinic, a = 6.7186 (10) Å b = 7.6942 (12) Å c = 8.2462 (13) Å α = 65.290 (11)° β = 75.499 (12)° γ = 68.207 (11)° V = 357.28 (10) Å3 Z = 1 Mo Kα radiation μ = 0.10 mm−1 T = 173 K 0.29 × 0.25 × 0.18 mm

Data collection

Stoe IPDS II two-circle diffractometer Absorption correction: multi-scan (X-AREA and X-RED32; Stoe & Cie, 2001 ▶) T min = 0.971, T max = 0.982 6958 measured reflections 1347 independent reflections 1171 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.090 S = 1.13 1347 reflections 100 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.14 e Å−3 Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681202260X/su2433sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202260X/su2433Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681202260X/su2433Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16N2O4Z = 1
Mr = 300.31F(000) = 158
Triclinic, P1Dx = 1.396 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.7186 (10) ÅCell parameters from 9708 reflections
b = 7.6942 (12) Åθ = 3.3–26.0°
c = 8.2462 (13) ŵ = 0.10 mm1
α = 65.290 (11)°T = 173 K
β = 75.499 (12)°Block, colourless
γ = 68.207 (11)°0.29 × 0.25 × 0.18 mm
V = 357.28 (10) Å3
Stoe IPDS II two-circle diffractometer1347 independent reflections
Radiation source: Genix 3D IµS microfocus X-ray source1171 reflections with I > 2σ(I)
Genix 3D multilayer optics monochromatorRint = 0.035
ω scansθmax = 25.6°, θmin = 3.3°
Absorption correction: multi-scan (X-AREA and X-RED32; Stoe & Cie, 2001)h = −7→8
Tmin = 0.971, Tmax = 0.982k = −9→9
6958 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H-atom parameters constrained
S = 1.13w = 1/[σ2(Fo2) + (0.0318P)2 + 0.1244P] where P = (Fo2 + 2Fc2)/3
1347 reflections(Δ/σ)max < 0.001
100 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.14 e Å3
Experimental. Spectroscopic details for the title compound:IR (KBr): 3087 (w), 1713 (s), 1589 (m), 1473 (w), 1294 (s), 1195 (s), 741(m), cm-1.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.31502 (17)1.03384 (16)0.27815 (14)0.0328 (3)
O20.66529 (16)0.87068 (16)0.31015 (13)0.0279 (3)
C10.4547 (2)0.8987 (2)0.36257 (19)0.0238 (3)
C30.7222 (2)1.0083 (2)0.13405 (19)0.0260 (3)
H3A0.67721.14600.13470.031*
H3B0.64961.01040.04230.031*
C40.9628 (2)0.9344 (2)0.09306 (19)0.0285 (4)
H4A1.00630.79420.09910.034*
H4B1.03340.93600.18420.034*
C110.4134 (2)0.7418 (2)0.53811 (19)0.0242 (3)
C120.5775 (3)0.6012 (2)0.64157 (19)0.0285 (3)
H120.72080.60670.59760.034*
N130.5455 (2)0.4591 (2)0.79911 (17)0.0339 (3)
C140.3422 (3)0.4555 (2)0.8578 (2)0.0325 (4)
H140.31580.35610.97030.039*
C150.1685 (3)0.5879 (2)0.7646 (2)0.0320 (4)
H150.02690.57880.81160.038*
C160.2046 (2)0.7336 (2)0.6017 (2)0.0286 (4)
H160.08830.82680.53420.034*
U11U22U33U12U13U23
O10.0257 (6)0.0321 (6)0.0288 (6)−0.0071 (5)−0.0041 (5)−0.0009 (5)
O20.0222 (5)0.0301 (6)0.0229 (5)−0.0088 (4)−0.0001 (4)−0.0023 (4)
C10.0231 (7)0.0254 (7)0.0224 (7)−0.0086 (6)−0.0017 (6)−0.0075 (6)
C30.0264 (8)0.0274 (7)0.0194 (7)−0.0117 (6)0.0004 (6)−0.0026 (6)
C40.0246 (8)0.0301 (8)0.0255 (8)−0.0097 (6)−0.0014 (6)−0.0047 (7)
C110.0268 (8)0.0216 (7)0.0230 (7)−0.0072 (6)0.0006 (6)−0.0090 (6)
C120.0260 (8)0.0298 (8)0.0248 (8)−0.0075 (6)0.0000 (6)−0.0077 (6)
N130.0331 (7)0.0303 (7)0.0271 (7)−0.0057 (6)−0.0022 (6)−0.0039 (6)
C140.0397 (9)0.0266 (8)0.0226 (8)−0.0121 (7)0.0039 (7)−0.0032 (6)
C150.0293 (8)0.0314 (8)0.0308 (8)−0.0135 (7)0.0054 (6)−0.0082 (7)
C160.0261 (8)0.0264 (8)0.0279 (8)−0.0065 (6)−0.0024 (6)−0.0065 (6)
O1—C11.2017 (18)C11—C161.384 (2)
O2—C11.3342 (18)C11—C121.389 (2)
O2—C31.4538 (17)C12—N131.333 (2)
C1—C111.4886 (19)C12—H120.9500
C3—C41.502 (2)N13—C141.337 (2)
C3—H3A0.9900C14—C151.379 (2)
C3—H3B0.9900C14—H140.9500
C4—C4i1.523 (3)C15—C161.378 (2)
C4—H4A0.9900C15—H150.9500
C4—H4B0.9900C16—H160.9500
C1—O2—C3115.98 (12)C16—C11—C12118.20 (14)
O1—C1—O2124.15 (13)C16—C11—C1119.43 (13)
O1—C1—C11123.99 (13)C12—C11—C1122.38 (13)
O2—C1—C11111.87 (12)N13—C12—C11123.74 (14)
O2—C3—C4106.96 (12)N13—C12—H12118.1
O2—C3—H3A110.3C11—C12—H12118.1
C4—C3—H3A110.3C12—N13—C14116.78 (14)
O2—C3—H3B110.3N13—C14—C15123.82 (14)
C4—C3—H3B110.3N13—C14—H14118.1
H3A—C3—H3B108.6C15—C14—H14118.1
C3—C4—C4i110.76 (16)C16—C15—C14118.61 (15)
C3—C4—H4A109.5C16—C15—H15120.7
C4i—C4—H4A109.5C14—C15—H15120.7
C3—C4—H4B109.5C15—C16—C11118.86 (15)
C4i—C4—H4B109.5C15—C16—H16120.6
H4A—C4—H4B108.1C11—C16—H16120.6
C3—O2—C1—O1−3.9 (2)C16—C11—C12—N13−0.3 (2)
C3—O2—C1—C11175.89 (12)C1—C11—C12—N13−179.97 (15)
C1—O2—C3—C4−173.02 (12)C11—C12—N13—C14−0.2 (2)
O2—C3—C4—C4i177.89 (15)C12—N13—C14—C150.5 (2)
O1—C1—C11—C167.7 (2)N13—C14—C15—C16−0.4 (3)
O2—C1—C11—C16−172.10 (13)C14—C15—C16—C11−0.1 (2)
O1—C1—C11—C12−172.59 (15)C12—C11—C16—C150.4 (2)
O2—C1—C11—C127.61 (19)C1—C11—C16—C15−179.89 (14)
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Propane-1,3-diyl bis-(pyridine-4-carboxyl-ate).

Authors:  Iván Brito; Javier Vallejos; Michael Bolte; Matías López-Rodríguez; Alejandro Cárdenas
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-02

3.  Ethane-1,2-diyl bis-(pyridine-3-car-box-ylate).

Authors:  Iván Brito; Javier Vallejos; Matías López-Rodríguez; Alejandro Cárdenas
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12

4.  Propane-1,3-diyl bis-(pyridine-3-carboxyl-ate).

Authors:  Iván Brito; Javier Vallejos; Michael Bolte; Matías López-Rodríguez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-13

5.  A monoclinic modification of propane-1,3-diyl bis-(pyridine-3-carboxyl-ate).

Authors:  Iván Brito; Javier Vallejos; Alejandro Cárdenas; Matías López-Rodríguez; Michael Bolte
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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