Literature DB >> 21579079

Propane-1,3-diyl bis-(pyridine-4-carboxyl-ate).

Iván Brito, Javier Vallejos, Michael Bolte, Matías López-Rodríguez, Alejandro Cárdenas.   

Abstract

The title compound. C(15)H(14)N(2)O(4), (I), has a gauche-gauche (O/C/C/C-O/C/C/C or GG) conformation and is a positional isomer of propane-1,3-diyl bis-(pyridine-3-carboxyl-ate), (II). The mol-ecule of (I) lies on a twofold rotation axis, which passes through the central C atom of the aliphatic chain, giving one half-mol-ecule per asymmetric unit. There is excellent agreement of the geometric parameters of (I) and (II). The most obvious differences between them are the O/C/C/C-O/C/C/C torsion angles [56.6 (2)° in (I) and 174.0 (3)/70.2 (3)° in (II) for GG and TG conformations, respectively] and the dihedral angle between the planes of the aromatic rings [80.3 (10)° in (I) and 76.5 (3)° in (II)]. The crystal structure is stabilized by weak C-H⋯ N and C-H⋯ O hydrogen bonding.

Entities:  

Year:  2010        PMID: 21579079      PMCID: PMC2979147          DOI: 10.1107/S1600536810011700

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound can be used as a nucleophilic tecton in self-assembly reactions with metal centres of varying lability. For conformation definitions see: Carlucci et al. (2002 ▶). For related structures, see: Brito et al. (2010 ▶); Chatterjee et al. (2004 ▶).

Experimental

Crystal data

C15H14N2O4 M = 286.28 Monoclinic, a = 23.022 (4) Å b = 4.9336 (5) Å c = 11.9604 (18) Å β = 98.118 (13)° V = 1344.9 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 173 K 0.18 × 0.15 × 0.09 mm

Data collection

Stoe IPDS II two-circle diffractometer 4231 measured reflections 1251 independent reflections 799 reflections with I > 2σ(I) R int = 0.070

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.094 S = 0.87 1251 reflections 96 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.21 e Å−3 Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810011700/fl2297sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810011700/fl2297Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H14N2O4F(000) = 600
Mr = 286.28Dx = 1.414 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2383 reflections
a = 23.022 (4) Åθ = 3.5–25.9°
b = 4.9336 (5) ŵ = 0.10 mm1
c = 11.9604 (18) ÅT = 173 K
β = 98.118 (13)°Plate, colourless
V = 1344.9 (3) Å30.18 × 0.15 × 0.09 mm
Z = 4
Stoe IPDS II two-circle diffractometer799 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.070
graphiteθmax = 25.6°, θmin = 3.4°
ω scansh = −22→28
4231 measured reflectionsk = −5→5
1251 independent reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H-atom parameters constrained
S = 0.87w = 1/[σ2(Fo2) + (0.0427P)2] where P = (Fo2 + 2Fc2)/3
1251 reflections(Δ/σ)max < 0.001
96 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.43077 (7)0.6064 (3)0.47123 (12)0.0356 (4)
C10.41465 (9)0.5769 (4)0.56249 (16)0.0270 (5)
O20.43693 (6)0.7138 (3)0.65570 (11)0.0300 (4)
C30.48573 (9)0.8943 (4)0.64276 (16)0.0287 (5)
H3A0.47481.01660.57750.034*
H3B0.52040.78710.62910.034*
C40.50001.0584 (6)0.75000.0292 (7)
H40.46611.17690.75790.035*
C110.36822 (9)0.3801 (4)0.58462 (16)0.0276 (5)
C120.34752 (9)0.1948 (4)0.50109 (17)0.0299 (5)
H120.36210.19490.43070.036*
C130.30531 (10)0.0107 (4)0.52223 (17)0.0323 (5)
H130.2921−0.11770.46510.039*
N140.28183 (8)0.0018 (4)0.61815 (14)0.0337 (5)
C150.30185 (10)0.1843 (5)0.69753 (18)0.0360 (5)
H150.28570.18320.76630.043*
C160.34464 (10)0.3735 (4)0.68496 (17)0.0326 (5)
H160.35770.49710.74410.039*
U11U22U33U12U13U23
O10.0412 (9)0.0404 (9)0.0264 (7)−0.0035 (8)0.0090 (6)−0.0045 (7)
C10.0279 (11)0.0268 (11)0.0257 (10)0.0040 (9)0.0018 (8)−0.0001 (8)
O20.0321 (8)0.0326 (8)0.0247 (7)−0.0054 (7)0.0021 (6)−0.0008 (6)
C30.0268 (11)0.0321 (11)0.0274 (10)−0.0021 (9)0.0045 (8)0.0024 (9)
C40.0307 (16)0.0280 (16)0.0286 (14)0.0000.0034 (12)0.000
C110.0281 (11)0.0283 (11)0.0256 (9)0.0053 (9)0.0010 (8)0.0019 (8)
C120.0352 (12)0.0314 (11)0.0227 (9)0.0009 (10)0.0033 (8)0.0007 (8)
C130.0338 (12)0.0309 (11)0.0308 (10)−0.0012 (10)−0.0001 (9)−0.0029 (9)
N140.0343 (11)0.0326 (10)0.0338 (10)−0.0010 (9)0.0029 (8)0.0013 (8)
C150.0396 (13)0.0401 (13)0.0294 (11)−0.0008 (11)0.0085 (9)−0.0004 (10)
C160.0364 (13)0.0333 (12)0.0280 (10)−0.0018 (10)0.0042 (9)−0.0050 (9)
O1—C11.210 (2)C11—C121.388 (3)
C1—O21.342 (2)C12—C131.379 (3)
C1—C111.495 (3)C12—H120.9500
O2—C31.459 (2)C13—N141.336 (3)
C3—C41.513 (2)C13—H130.9500
C3—H3A0.9900N14—C151.342 (3)
C3—H3B0.9900C15—C161.381 (3)
C4—C3i1.513 (2)C15—H150.9500
C4—H40.9900C16—H160.9500
C11—C161.386 (3)
O1—C1—O2124.0 (2)C12—C11—C1118.80 (18)
O1—C1—C11123.76 (18)C13—C12—C11118.75 (19)
O2—C1—C11112.26 (17)C13—C12—H12120.6
C1—O2—C3115.39 (15)C11—C12—H12120.6
O2—C3—C4108.35 (15)N14—C13—C12124.04 (19)
O2—C3—H3A110.0N14—C13—H13118.0
C4—C3—H3A110.0C12—C13—H13118.0
O2—C3—H3B110.0C13—N14—C15116.44 (19)
C4—C3—H3B110.0N14—C15—C16123.7 (2)
H3A—C3—H3B108.4N14—C15—H15118.1
C3i—C4—C3115.3 (2)C16—C15—H15118.1
C3i—C4—H4108.3C15—C16—C11118.88 (19)
C3—C4—H4108.5C15—C16—H16120.6
C16—C11—C12118.1 (2)C11—C16—H16120.6
C16—C11—C1123.08 (18)
O1—C1—O2—C3−3.7 (3)C16—C11—C12—C13−1.0 (3)
C11—C1—O2—C3175.34 (17)C1—C11—C12—C13179.05 (19)
C1—O2—C3—C4172.61 (16)C11—C12—C13—N141.4 (3)
O2—C3—C4—C3i56.56 (11)C12—C13—N14—C15−0.7 (3)
O1—C1—C11—C16−171.1 (2)C13—N14—C15—C16−0.5 (3)
O2—C1—C11—C169.9 (3)N14—C15—C16—C110.8 (3)
O1—C1—C11—C128.9 (3)C12—C11—C16—C150.0 (3)
O2—C1—C11—C12−170.21 (18)C1—C11—C16—C15179.9 (2)
D—H···AD—HH···AD···AD—H···A
C13—H13···N14ii0.952.653.505 (3)151
C15—H15···N14iii0.952.723.496 (3)139
C3—H3A···O1iv0.992.983.516 (3)115
C3—H3B···O1v0.992.623.521 (3)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13⋯N14i0.952.653.505 (3)151
C15—H15⋯N14ii0.952.723.496 (3)139
C3—H3A⋯O1iii0.992.983.516 (3)115
C3—H3B⋯O1iv0.992.623.521 (3)152

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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