Literature DB >> 21522970

A monoclinic modification of propane-1,3-diyl bis-(pyridine-3-carboxyl-ate).

Iván Brito, Javier Vallejos, Alejandro Cárdenas, Matías López-Rodríguez, Michael Bolte.   

Abstract

In the title compound, C(15)H(14)N(2)O(4), (I), the mol-ecule lies on a twofold rotation axis which passes through the central C atom of the aliphatic chain, giving one half-mol-ecule per asymmetric unit. The structure is a monoclinic polymorph of the triclinic structure previously reported [Brito, Vallejos, Bolte & López-Rodríguez (2010). Acta Cryst. E66, o792], (II). The most obvious difference between them is the O/C/C/C-O/C/C/C torsion angle [58.2 (7)° in (I) and 173.4 (3)/70.2 (3)° in (II) for GG and TG conformations, respectively]. Another important difference is observed in the dihedral angle between the planes of the aromatic rings [86.49 (7)° for (I) and 76.4 (3)° for (II)]. The crystal structure features a weak π-π inter-action [centroid-centroid distance = 4.1397 (10)Å]; this latter kind of inter-action is not evident in the triclinic polymorph.

Entities:  

Year:  2011        PMID: 21522970      PMCID: PMC3051592          DOI: 10.1107/S1600536810054309

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For conformation definitions, see: Carlucci et al. (2002 ▶). For the structure of the triclinic polymorph, see: Brito et al. (2010a ▶). For the synthesis and structural characterization of coordination polymers, see: Brito et al. (2010b ▶).

Experimental

Crystal data

C15H14N2O4 M = 286.28 Monoclinic, a = 24.414 (3) Å b = 4.8328 (4) Å c = 11.5667 (14) Å β = 100.671 (10)° V = 1341.1 (3) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 173 K 0.35 × 0.33 × 0.13 mm

Data collection

Stoe IPDS II two-circle diffractometer 3193 measured reflections 1249 independent reflections 939 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.081 S = 0.92 1249 reflections 97 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.14 e Å−3 Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810054309/om2394sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810054309/om2394Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H14N2O4F(000) = 600
Mr = 286.28Dx = 1.418 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2928 reflections
a = 24.414 (3) Åθ = 3.4–25.9°
b = 4.8328 (4) ŵ = 0.11 mm1
c = 11.5667 (14) ÅT = 173 K
β = 100.671 (10)°Block, colourless
V = 1341.1 (3) Å30.35 × 0.33 × 0.13 mm
Z = 4
Stoe IPDS II two-circle diffractometer939 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.037
graphiteθmax = 25.6°, θmin = 3.4°
ω scansh = −29→29
3193 measured reflectionsk = −5→5
1249 independent reflectionsl = −14→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.081w = 1/[σ2(Fo2) + (0.0497P)2] where P = (Fo2 + 2Fc2)/3
S = 0.92(Δ/σ)max = 0.001
1249 reflectionsΔρmax = 0.17 e Å3
97 parametersΔρmin = −0.14 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0099 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.57094 (4)0.5968 (2)0.53846 (8)0.0343 (3)
C10.58554 (6)0.5710 (3)0.44442 (11)0.0250 (3)
O20.56326 (4)0.7135 (2)0.34794 (7)0.0273 (3)
C30.51676 (6)0.8926 (3)0.36128 (11)0.0272 (3)
H3A0.52801.01840.42910.033*
H3B0.48490.77950.37590.033*
C40.50001.0583 (4)0.25000.0266 (5)
H4A0.46791.18040.25990.032*
C110.62930 (6)0.3744 (3)0.42290 (11)0.0254 (3)
C120.65354 (6)0.2013 (3)0.51425 (12)0.0299 (4)
H120.64150.21800.58750.036*
N130.69262 (5)0.0130 (3)0.50556 (10)0.0342 (3)
C140.70870 (6)−0.0051 (3)0.40112 (12)0.0324 (4)
H140.7368−0.13600.39300.039*
C150.68699 (6)0.1548 (3)0.30476 (12)0.0317 (4)
H150.69980.13270.23250.038*
C160.64628 (6)0.3481 (3)0.31495 (11)0.0290 (3)
H160.63030.46010.24990.035*
U11U22U33U12U13U23
O10.0395 (6)0.0414 (6)0.0238 (5)0.0043 (5)0.0102 (4)0.0026 (4)
C10.0281 (8)0.0259 (7)0.0199 (6)−0.0060 (6)0.0013 (6)0.0007 (5)
O20.0313 (6)0.0290 (5)0.0220 (5)0.0045 (4)0.0062 (4)0.0017 (4)
C30.0274 (8)0.0293 (8)0.0260 (7)0.0015 (6)0.0080 (6)−0.0020 (6)
C40.0259 (11)0.0260 (11)0.0281 (9)0.0000.0057 (8)0.000
C110.0268 (7)0.0248 (7)0.0238 (6)−0.0053 (6)0.0030 (6)−0.0014 (5)
C120.0355 (9)0.0308 (8)0.0232 (6)−0.0007 (7)0.0049 (6)−0.0009 (6)
N130.0378 (8)0.0339 (7)0.0303 (6)0.0037 (6)0.0045 (5)0.0008 (5)
C140.0306 (9)0.0315 (8)0.0354 (8)0.0008 (6)0.0067 (6)−0.0042 (6)
C150.0335 (8)0.0346 (8)0.0282 (7)−0.0043 (7)0.0091 (6)−0.0037 (6)
C160.0321 (8)0.0312 (8)0.0231 (7)−0.0052 (6)0.0037 (6)0.0009 (6)
O1—C11.2122 (14)C11—C161.3925 (16)
C1—O21.3381 (16)C12—N131.3355 (19)
C1—C111.4849 (19)C12—H120.9500
O2—C31.4585 (16)N13—C141.3405 (17)
C3—C41.5069 (17)C14—C151.379 (2)
C3—H3A0.9900C14—H140.9500
C3—H3B0.9900C15—C161.385 (2)
C4—C3i1.5069 (17)C15—H150.9500
C4—H4A1.0042C16—H160.9500
C11—C121.391 (2)
O1—C1—O2123.62 (13)C16—C11—C1123.47 (12)
O1—C1—C11123.82 (12)N13—C12—C11124.20 (12)
O2—C1—C11112.54 (10)N13—C12—H12117.9
C1—O2—C3114.92 (9)C11—C12—H12117.9
O2—C3—C4108.59 (9)C12—N13—C14116.40 (13)
O2—C3—H3A110.0N13—C14—C15123.98 (14)
C4—C3—H3A110.0N13—C14—H14118.0
O2—C3—H3B110.0C15—C14—H14118.0
C4—C3—H3B110.0C14—C15—C16118.94 (12)
H3A—C3—H3B108.4C14—C15—H15120.5
C3i—C4—C3115.77 (17)C16—C15—H15120.5
C3i—C4—H4A108.4C15—C16—C11118.38 (13)
C3—C4—H4A108.0C15—C16—H16120.8
C12—C11—C16118.09 (13)C11—C16—H16120.8
C12—C11—C1118.41 (11)
O1—C1—O2—C3−3.94 (19)C16—C11—C12—N130.8 (2)
C11—C1—O2—C3174.99 (11)C1—C11—C12—N13178.94 (14)
C1—O2—C3—C4174.58 (12)C11—C12—N13—C140.1 (2)
O2—C3—C4—C3i58.11 (8)C12—N13—C14—C15−0.7 (2)
O1—C1—C11—C122.7 (2)N13—C14—C15—C160.4 (2)
O2—C1—C11—C12−176.23 (13)C14—C15—C16—C110.5 (2)
O1—C1—C11—C16−179.25 (13)C12—C11—C16—C15−1.1 (2)
O2—C1—C11—C161.83 (19)C1—C11—C16—C15−179.13 (13)
D—H···AD—HH···AD···AD—H···A
C12—H12···O10.952.512.8298 (18)100
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Propane-1,3-diyl bis-(pyridine-3-carboxyl-ate).

Authors:  Iván Brito; Javier Vallejos; Michael Bolte; Matías López-Rodríguez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-13
  2 in total
  2 in total

1.  Propane-1,3-diaminium bis-(pyridine-4-carboxyl-ate) monohydrate.

Authors:  Iván Brito; Javier Vallejos; Alejandro Cárdenas; Matías López-Rodríguez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27

2.  Butane-1,4-diyl bis-(pyridine-3-carboxyl-ate).

Authors:  Javier Vallejos; Iván Brito; Alejandro Cárdenas; Michael Bolte
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13
  2 in total

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