Literature DB >> 21580631

Propane-1,3-diyl bis-(pyridine-3-carboxyl-ate).

Iván Brito, Javier Vallejos, Michael Bolte, Matías López-Rodríguez.   

Abstract

The title compound, C(15)H(14)N(2)O(4), has a trans-gauche [O/C/C/C-O/C/C/C] (TG) conformation. The angle between the planes of aromatic rings is 76.4 (3)°. The crystal structure is stabilized by van der Waals inter-actions and C-H⋯O hydrogen bonds. The crystal used was a non-merohedral twin with a fractional contribution of the minor component of 0.443 (5).

Entities:  

Year:  2010        PMID: 21580631      PMCID: PMC2983924          DOI: 10.1107/S1600536810008810

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For conformation definitions, see: Carlucci et al. (2002 ▶). For applications of crystalline nanoporous coordination polymers, see Matsuda et al. (2005 ▶); Wu et al. (2005 ▶); Xiang et al. (2005 ▶).

Experimental

Crystal data

C15H14N2O4 M = 286.28 Triclinic, a = 4.4797 (11) Å b = 10.911 (3) Å c = 14.842 (4) Å α = 104.41 (2)° β = 95.90 (2)° γ = 100.90 (2)° V = 681.3 (3) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 173 K 0.22 × 0.14 × 0.07 mm

Data collection

Stoe IPDS II two-circle diffractometer 8629 measured reflections 2558 independent reflections 1382 reflections with I > 2σ(I) R int = 0.119

Refinement

R[F 2 > 2σ(F 2)] = 0.109 wR(F 2) = 0.276 S = 1.49 2558 reflections 191 parameters H-atom parameters constrained Δρmax = 0.43 e Å−3 Δρmin = −0.46 e Å−3 Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810008810/om2324sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810008810/om2324Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H14N2O4Z = 2
Mr = 286.28F(000) = 300
Triclinic, P1Dx = 1.395 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.4797 (11) ÅCell parameters from 3924 reflections
b = 10.911 (3) Åθ = 3.9–25.8°
c = 14.842 (4) ŵ = 0.10 mm1
α = 104.41 (2)°T = 173 K
β = 95.90 (2)°Plate, colourless
γ = 100.90 (2)°0.22 × 0.14 × 0.07 mm
V = 681.3 (3) Å3
Stoe IPDS II two-circle diffractometer1382 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.119
graphiteθmax = 26.0°, θmin = 3.8°
ω scansh = −5→5
8629 measured reflectionsk = −13→12
2558 independent reflectionsl = −12→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.109Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.276H-atom parameters constrained
S = 1.49w = 1/[σ2(Fo2) + (0.090P)2] where P = (Fo2 + 2Fc2)/3
2558 reflections(Δ/σ)max < 0.001
191 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.46 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.8187 (10)0.2723 (4)0.2445 (4)0.0458 (12)
O20.6697 (13)0.0749 (5)0.1430 (4)0.0637 (16)
O31.1653 (9)0.2272 (4)0.5109 (3)0.0405 (11)
O41.2061 (11)0.4252 (4)0.6081 (4)0.0540 (14)
C10.6560 (14)0.1865 (6)0.1644 (5)0.0434 (17)
C21.0002 (15)0.2161 (6)0.3054 (5)0.0434 (16)
H2A1.12960.16480.26880.052*
H2B0.86290.15870.33340.052*
C31.2023 (14)0.3317 (6)0.3827 (5)0.0448 (17)
H3A1.35150.38380.35430.054*
H3B1.07180.38810.41350.054*
C41.3748 (14)0.2826 (7)0.4557 (5)0.0445 (17)
H4A1.47950.21600.42340.053*
H4B1.53390.35540.49810.053*
C51.0994 (13)0.3111 (6)0.5848 (5)0.0439 (17)
C110.4701 (14)0.2473 (6)0.1081 (5)0.0420 (16)
C120.4516 (15)0.3777 (6)0.1359 (5)0.0451 (17)
H120.56460.43080.19480.054*
N130.2835 (15)0.4308 (6)0.0838 (5)0.0568 (17)
C140.1172 (16)0.3544 (7)0.0009 (6)0.0538 (19)
H14−0.00700.3904−0.03670.065*
C150.1253 (17)0.2229 (7)−0.0306 (6)0.055 (2)
H150.01210.1712−0.08990.066*
C160.2940 (17)0.1699 (7)0.0235 (6)0.0516 (19)
H160.29230.08000.00370.062*
C210.8829 (13)0.2446 (6)0.6378 (5)0.0386 (15)
C220.7613 (14)0.1126 (6)0.6107 (6)0.0472 (18)
H220.81920.06260.55600.057*
N230.5693 (13)0.0501 (6)0.6553 (4)0.0505 (16)
C240.4879 (17)0.1254 (7)0.7329 (6)0.0526 (19)
H240.34860.08430.76610.063*
C250.5981 (16)0.2594 (6)0.7660 (5)0.0470 (17)
H250.53690.30860.82050.056*
C260.7973 (14)0.3177 (6)0.7173 (5)0.0446 (17)
H260.87720.40890.73810.054*
U11U22U33U12U13U23
O10.045 (2)0.027 (2)0.054 (3)0.0010 (19)−0.005 (2)0.001 (2)
O20.095 (4)0.041 (3)0.047 (3)0.020 (3)−0.005 (3)−0.001 (2)
O30.036 (2)0.035 (2)0.043 (3)−0.0023 (18)0.005 (2)0.004 (2)
O40.051 (3)0.032 (3)0.066 (4)−0.004 (2)0.006 (2)0.003 (2)
C10.043 (3)0.033 (4)0.048 (5)0.002 (3)0.003 (3)0.008 (3)
C20.044 (3)0.033 (3)0.053 (4)0.006 (3)0.006 (3)0.014 (3)
C30.037 (3)0.031 (3)0.056 (4)−0.008 (3)−0.001 (3)0.009 (3)
C40.041 (3)0.040 (4)0.054 (5)0.002 (3)0.015 (3)0.020 (3)
C50.034 (3)0.027 (3)0.062 (5)0.002 (3)−0.001 (3)0.002 (3)
C110.046 (3)0.025 (3)0.046 (4)0.004 (3)0.005 (3)−0.002 (3)
C120.053 (4)0.027 (3)0.048 (5)0.007 (3)0.003 (3)0.001 (3)
N130.072 (4)0.039 (3)0.051 (4)0.013 (3)−0.006 (3)0.003 (3)
C140.057 (4)0.041 (4)0.057 (5)0.012 (3)−0.009 (4)0.008 (4)
C150.059 (4)0.043 (4)0.049 (5)0.008 (3)0.007 (4)−0.010 (3)
C160.066 (4)0.030 (3)0.051 (5)0.006 (3)0.009 (4)0.001 (3)
C210.031 (3)0.029 (3)0.044 (4)0.001 (2)−0.007 (3)−0.002 (3)
C220.045 (3)0.024 (3)0.063 (5)0.001 (3)0.003 (3)0.003 (3)
N230.054 (3)0.041 (3)0.048 (4)−0.002 (3)0.004 (3)0.008 (3)
C240.058 (4)0.040 (4)0.055 (5)0.004 (3)0.011 (4)0.010 (4)
C250.050 (4)0.034 (3)0.047 (4)0.006 (3)−0.002 (3)−0.002 (3)
C260.042 (3)0.028 (3)0.051 (5)0.004 (3)0.000 (3)−0.008 (3)
O1—C11.353 (8)C12—N131.329 (10)
O1—C21.472 (8)C12—H120.9500
O2—C11.194 (8)N13—C141.353 (10)
O3—C51.340 (8)C14—C151.402 (10)
O3—C41.452 (7)C14—H140.9500
O4—C51.193 (8)C15—C161.349 (12)
C1—C111.475 (10)C15—H150.9500
C2—C31.537 (9)C16—H160.9500
C2—H2A0.9900C21—C221.379 (8)
C2—H2B0.9900C21—C261.384 (9)
C3—C41.528 (10)C22—N231.328 (9)
C3—H3A0.9900C22—H220.9500
C3—H3B0.9900N23—C241.364 (10)
C4—H4A0.9900C24—C251.393 (9)
C4—H4B0.9900C24—H240.9500
C5—C211.504 (10)C25—C261.368 (10)
C11—C161.389 (10)C25—H250.9500
C11—C121.400 (8)C26—H260.9500
C1—O1—C2114.8 (5)N13—C12—C11123.2 (7)
C5—O3—C4116.2 (5)N13—C12—H12118.4
O2—C1—O1122.4 (6)C11—C12—H12118.4
O2—C1—C11125.2 (6)C12—N13—C14118.4 (7)
O1—C1—C11112.4 (6)N13—C14—C15121.1 (7)
O1—C2—C3105.9 (5)N13—C14—H14119.5
O1—C2—H2A110.6C15—C14—H14119.5
C3—C2—H2A110.6C16—C15—C14119.9 (7)
O1—C2—H2B110.6C16—C15—H15120.0
C3—C2—H2B110.6C14—C15—H15120.0
H2A—C2—H2B108.7C15—C16—C11119.8 (7)
C4—C3—C2109.8 (6)C15—C16—H16120.1
C4—C3—H3A109.7C11—C16—H16120.1
C2—C3—H3A109.7C22—C21—C26117.6 (7)
C4—C3—H3B109.7C22—C21—C5123.1 (6)
C2—C3—H3B109.7C26—C21—C5119.3 (6)
H3A—C3—H3B108.2N23—C22—C21125.0 (7)
O3—C4—C3111.0 (5)N23—C22—H22117.5
O3—C4—H4A109.4C21—C22—H22117.5
C3—C4—H4A109.4C22—N23—C24115.8 (6)
O3—C4—H4B109.4N23—C24—C25123.6 (7)
C3—C4—H4B109.4N23—C24—H24118.2
H4A—C4—H4B108.0C25—C24—H24118.2
O4—C5—O3124.4 (6)C26—C25—C24117.7 (7)
O4—C5—C21123.4 (7)C26—C25—H25121.2
O3—C5—C21112.2 (5)C24—C25—H25121.2
C16—C11—C12117.6 (7)C25—C26—C21120.3 (6)
C16—C11—C1118.2 (6)C25—C26—H26119.8
C12—C11—C1124.1 (6)C21—C26—H26119.8
C2—O1—C1—O2−3.1 (9)N13—C14—C15—C161.9 (12)
C2—O1—C1—C11177.9 (5)C14—C15—C16—C11−2.9 (11)
C1—O1—C2—C3171.4 (5)C12—C11—C16—C153.2 (10)
O1—C2—C3—C4173.9 (5)C1—C11—C16—C15−178.9 (7)
C5—O3—C4—C3−84.3 (7)O4—C5—C21—C22−179.8 (7)
C2—C3—C4—O3−70.1 (7)O3—C5—C21—C22−1.8 (9)
C4—O3—C5—O4−1.7 (10)O4—C5—C21—C260.8 (10)
C4—O3—C5—C21−179.6 (6)O3—C5—C21—C26178.7 (6)
O2—C1—C11—C160.4 (11)C26—C21—C22—N23−0.4 (11)
O1—C1—C11—C16179.4 (6)C5—C21—C22—N23−179.9 (7)
O2—C1—C11—C12178.2 (7)C21—C22—N23—C240.9 (11)
O1—C1—C11—C12−2.8 (9)C22—N23—C24—C25−0.9 (11)
C16—C11—C12—N13−2.5 (10)N23—C24—C25—C260.3 (12)
C1—C11—C12—N13179.7 (7)C24—C25—C26—C210.2 (10)
C11—C12—N13—C141.4 (11)C22—C21—C26—C25−0.2 (10)
C12—N13—C14—C15−1.1 (11)C5—C21—C26—C25179.3 (7)
D—H···AD—HH···AD···AD—H···A
C3—H3A···O4i0.992.493.341 (8)144
C16—H16···O2ii0.952.453.198 (10)136
C24—H24···O2iii0.952.453.218 (10)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3A⋯O4i0.992.493.341 (8)144
C16—H16⋯O2ii0.952.453.198 (10)136
C24—H24⋯O2iii0.952.453.218 (10)138

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  Propane-1,3-diyl bis-(pyridine-4-carboxyl-ate).

Authors:  Iván Brito; Javier Vallejos; Michael Bolte; Matías López-Rodríguez; Alejandro Cárdenas
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-02

2.  A monoclinic modification of propane-1,3-diyl bis-(pyridine-3-carboxyl-ate).

Authors:  Iván Brito; Javier Vallejos; Alejandro Cárdenas; Matías López-Rodríguez; Michael Bolte
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08

3.  Butane-1,4-diyl bis-(pyridine-3-carboxyl-ate).

Authors:  Javier Vallejos; Iván Brito; Alejandro Cárdenas; Michael Bolte
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13
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