Literature DB >> 22807764

Poly[μ(2)-aqua-μ(2)-(pyrazine-2-carboxyl-ato)-lithium].

Wojciech Starosta1, Janusz Leciejewicz.   

Abstract

The structure of the title compound, [Li(C(5)H(3)N(2)O(2))(n class="Chemical">H(2)O)](n), contains an Li(I) ion with a distorted trigonal-bipyramidal coordination environment involving the N and O atoms of pyrazine-2-carboxyl-ate ligands with a bridging carboxyl-ate group, and two aqua O atoms also in a bridging mode. The symmetry-related Li(I) ions bridged by a carboxyl-ate O atom and a coordinating water O atom form an Li(2)O(2) unit with an Li⋯Li distance of 3.052 (4) Å, which generates mol-ecular ribbons propagating in the c-axis direction. The ribbons are held together by a network of O-H⋯O hydrogen bonds in which the coordinating water mol-ecules act as donors and the carboxyl-ate O atoms as acceptors.

Entities:  

Year:  2012        PMID: 22807764      PMCID: PMC3393196          DOI: 10.1107/S1600536812024683

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of an LiI complex with a 3-amino­n class="Chemical">pyrazine-2-carboxyl­ate ligand, see: Starosta & Leciejewicz, (2010 ▶) and for the crystal structure of an LiI complex with a 5-methyl­pyrazine-2-carboxyl­ate ligand, see: Starosta & Lecieje­wicz, (2011a ▶). The structures of complexes with pyrid­azine-3-carboxyl­ate and pyridazine-4-carboxyl­ate ligands were reported by Starosta & Leciejewicz, (2011 ▶). The structure of a complex with a pyrimidine-2-carboxyl­ate ligand was also determined (Starosta & Leciejewicz, 2011d ▶).

Experimental

Crystal data

[Li(C5H3N2n class="Chemical">O2)(H2O)] M = 148.05 Orthorhombic, a = 24.433 (5) Å b = 4.7861 (10) Å c = 5.6385 (11) Å V = 659.4 (2) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.35 × 0.18 × 0.13 mm

Data collection

Kuma KM-4 four-cricle diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.972, T max = 0.995 1586 measured reflections 1056 independent reflections 813 reflections with I > 2σ(I) R int = 0.078 3 standard reflections every 200 reflections intensity decay: 4.4%

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.116 S = 1.09 1056 reflections 108 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.30 e Å−3 Data collection: KM-4 Software (Kuma, 1996 ▶); cell refinement: KM-4 Software; data reduction: DATAPROC (Kuma, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812024683/kp2421sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812024683/kp2421Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812024683/kp2421Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Li(C5H3N2O2)(H2O)]F(000) = 304
Mr = 148.05Dx = 1.491 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 25 reflections
a = 24.433 (5) Åθ = 6–15°
b = 4.7861 (10) ŵ = 0.12 mm1
c = 5.6385 (11) ÅT = 293 K
V = 659.4 (2) Å3Blocks, colourless
Z = 40.35 × 0.18 × 0.13 mm
Kuma KM-4 four-cricle diffractometer813 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.078
Graphite monochromatorθmax = 30.1°, θmin = 1.7°
profile data from ω/2θ scansh = −27→34
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008)k = 0→6
Tmin = 0.972, Tmax = 0.995l = 0→7
1586 measured reflections3 standard reflections every 200 reflections
1056 independent reflections intensity decay: 4.4%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0244P)2 + 0.4211P] where P = (Fo2 + 2Fc2)/3
1056 reflections(Δ/σ)max < 0.001
108 parametersΔρmax = 0.31 e Å3
1 restraintΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.28627 (9)1.1874 (4)0.7415 (4)0.0324 (4)
O20.35150 (10)1.3781 (5)0.5168 (5)0.0480 (7)
N10.36091 (10)0.8665 (5)0.9601 (5)0.0320 (5)
C20.37639 (11)1.0110 (5)0.7680 (5)0.0258 (5)
C70.33500 (11)1.2093 (5)0.6658 (5)0.0281 (5)
C50.44910 (14)0.6601 (7)0.9486 (7)0.0453 (8)
H50.47350.53461.01670.054*
N20.46487 (12)0.8025 (6)0.7586 (6)0.0462 (7)
C60.39802 (14)0.6901 (7)1.0492 (6)0.0414 (7)
H60.38920.58511.18250.050*
C30.42814 (12)0.9788 (7)0.6705 (6)0.0364 (6)
H30.43751.08480.53830.044*
Li10.2739 (2)0.9324 (11)1.0354 (10)0.0338 (10)
O30.22904 (9)0.6809 (4)0.8254 (4)0.0282 (4)
H310.247 (3)0.538 (8)0.796 (9)0.051 (11)*
H320.1986 (18)0.599 (8)0.901 (7)0.046 (11)*
U11U22U33U12U13U23
O10.0283 (8)0.0332 (9)0.0358 (10)0.0041 (8)0.0052 (9)0.0123 (10)
O20.0369 (11)0.0567 (13)0.0504 (15)0.0051 (10)0.0081 (11)0.0333 (12)
N10.0324 (12)0.0371 (11)0.0265 (11)0.0009 (10)0.0033 (11)0.0109 (10)
C20.0244 (10)0.0276 (10)0.0254 (11)−0.0016 (10)0.0010 (10)0.0055 (10)
C70.0288 (11)0.0282 (11)0.0274 (12)0.0006 (10)0.0000 (11)0.0069 (12)
C50.0361 (16)0.0481 (17)0.0517 (19)0.0118 (14)−0.0062 (17)0.0153 (16)
N20.0333 (13)0.0540 (16)0.0514 (17)0.0105 (12)0.0064 (13)0.0105 (16)
C60.0388 (16)0.0493 (17)0.0362 (15)0.0036 (13)−0.0019 (14)0.0205 (15)
C30.0311 (13)0.0433 (15)0.0347 (14)0.0014 (12)0.0098 (13)0.0093 (14)
Li10.036 (3)0.040 (2)0.026 (2)−0.002 (2)0.001 (2)0.007 (2)
O30.0328 (9)0.0287 (9)0.0230 (8)−0.0004 (8)0.0014 (8)0.0075 (9)
O1—C71.269 (4)N2—C31.328 (4)
Li1—O12.080 (6)C6—H60.9300
O1—Li1i2.237 (6)C3—H30.9300
O2—C71.233 (4)Li1—O32.013 (6)
N1—C61.337 (4)Li1—O3ii2.032 (5)
N1—C21.340 (4)Li1—O1ii2.237 (6)
Li1—N12.190 (6)Li1—Li1i3.052 (4)
C2—C31.387 (4)Li1—Li1ii3.052 (4)
C2—C71.502 (4)O3—Li1i2.032 (5)
C5—N21.327 (5)O3—H310.83 (5)
C5—C61.379 (5)O3—H320.94 (4)
C5—H50.9300
C7—O1—Li1116.9 (2)O3—Li1—N1109.2 (3)
C7—O1—Li1i119.2 (2)O3ii—Li1—N196.0 (2)
Li1—O1—Li1i89.92 (19)O1—Li1—N177.8 (2)
C6—N1—C2116.0 (3)O3—Li1—O1ii105.9 (3)
C6—N1—Li1132.6 (3)O3ii—Li1—O1ii83.2 (2)
C2—N1—Li1110.9 (2)O1—Li1—O1ii100.9 (2)
N1—C2—C3121.4 (3)N1—Li1—O1ii144.8 (3)
N1—C2—C7116.5 (2)O3—Li1—Li1i41.25 (17)
C3—C2—C7122.1 (2)O3ii—Li1—Li1i136.9 (2)
O2—C7—O1126.1 (3)O1—Li1—Li1i47.12 (13)
O2—C7—C2117.1 (3)N1—Li1—Li1i101.1 (2)
O1—C7—C2116.8 (2)O1ii—Li1—Li1i103.2 (3)
N2—C5—C6122.8 (3)O3—Li1—Li1ii109.5 (3)
N2—C5—H5118.6O3ii—Li1—Li1ii40.79 (14)
C6—C5—H5118.6O1—Li1—Li1ii142.33 (19)
C5—N2—C3115.6 (3)N1—Li1—Li1ii123.4 (3)
N1—C6—C5121.7 (3)O1ii—Li1—Li1ii42.96 (17)
N1—C6—H6119.2Li1i—Li1—Li1ii135.0 (4)
C5—C6—H6119.2Li1—O3—Li1i98.0 (2)
N2—C3—C2122.5 (3)Li1—O3—H31109 (4)
N2—C3—H3118.7Li1i—O3—H31110 (3)
C2—C3—H3118.7Li1—O3—H32114 (3)
O3—Li1—O3ii95.7 (2)Li1i—O3—H32126 (2)
O3—Li1—O187.8 (2)H31—O3—H32100 (4)
O3ii—Li1—O1173.7 (3)
D—H···AD—HH···AD···AD—H···A
O3—H31···O1iii0.83 (5)1.96 (5)2.786 (3)176 (5)
O3—H32···O2iv0.94 (4)1.75 (4)2.672 (3)167 (4)
Table 1

Selected bond lengths (Å)

Li1—O12.080 (6)
Li1—N12.190 (6)
Li1—O32.013 (6)
Li1—O3i 2.032 (5)
Li1—O1i 2.237 (6)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H31⋯O1ii 0.83 (5)1.96 (5)2.786 (3)176 (5)
O3—H32⋯O2iii 0.94 (4)1.75 (4)2.672 (3)167 (4)

Symmetry codes: (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Poly[aqua-(μ(3)-pyridazine-4-carboxyl-ato-κO:O:O')lithium].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-12

3.  trans-Diaqua-(pyridazine-3-carboxyl-ato-κN,O)lithium.

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-15

4.  Poly[(μ(2)-nitrato-κO:O')(μ(2)-pyrimidin-ium-2-carboxyl-ato-κO:O')lithium(I)].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-28

5.  Poly[di-μ(2)-aqua-μ(2)-(5-methyl-pyrazine-2-carboxyl-ato)-(5-methyl-pyrazine-2-carboxyl-ato)-μ(3)-nitrato-trilithium].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-30

6.  catena-Poly[[bis-(μ-3-amino-pyrazine-2-carboxyl-ato)-κN,O:O;κO:N,O)dilithium]-di-μ-aqua].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-05
  6 in total

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