| Literature DB >> 22807764 |
Wojciech Starosta1, Janusz Leciejewicz.
Abstract
The structure of the title compound, [Li(C(5)H(3)N(2)O(2))(H(2)O)](n), contains an Li(I) ion with a distorted trigonal-bipyramidal coordination environment involving the N and O atoms of pyrazine-2-carboxyl-ate ligands with a bridging carboxyl-ate group, and two aqua O atoms also in a bridging mode. The symmetry-related Li(I) ions bridged by a carboxyl-ate O atom and a coordinating water O atom form an Li(2)O(2) unit with an Li⋯Li distance of 3.052 (4) Å, which generates mol-ecular ribbons propagating in the c-axis direction. The ribbons are held together by a network of O-H⋯O hydrogen bonds in which the coordinating water mol-ecules act as donors and the carboxyl-ate O atoms as acceptors.Entities:
Year: 2012 PMID: 22807764 PMCID: PMC3393196 DOI: 10.1107/S1600536812024683
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Li(C5H3N2O2)(H2O)] | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2ac | Cell parameters from 25 reflections |
| θ = 6–15° | |
| µ = 0.12 mm−1 | |
| Blocks, colourless | |
| 0.35 × 0.18 × 0.13 mm |
| Kuma KM-4 four-cricle diffractometer | 813 reflections with |
| Radiation source: fine-focus sealed tube | |
| Graphite monochromator | θmax = 30.1°, θmin = 1.7° |
| profile data from ω/2θ scans | |
| Absorption correction: analytical ( | |
| 1586 measured reflections | 3 standard reflections every 200 reflections |
| 1056 independent reflections | intensity decay: 4.4% |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1056 reflections | (Δ/σ)max < 0.001 |
| 108 parameters | Δρmax = 0.31 e Å−3 |
| 1 restraint | Δρmin = −0.30 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.28627 (9) | 1.1874 (4) | 0.7415 (4) | 0.0324 (4) | |
| O2 | 0.35150 (10) | 1.3781 (5) | 0.5168 (5) | 0.0480 (7) | |
| N1 | 0.36091 (10) | 0.8665 (5) | 0.9601 (5) | 0.0320 (5) | |
| C2 | 0.37639 (11) | 1.0110 (5) | 0.7680 (5) | 0.0258 (5) | |
| C7 | 0.33500 (11) | 1.2093 (5) | 0.6658 (5) | 0.0281 (5) | |
| C5 | 0.44910 (14) | 0.6601 (7) | 0.9486 (7) | 0.0453 (8) | |
| H5 | 0.4735 | 0.5346 | 1.0167 | 0.054* | |
| N2 | 0.46487 (12) | 0.8025 (6) | 0.7586 (6) | 0.0462 (7) | |
| C6 | 0.39802 (14) | 0.6901 (7) | 1.0492 (6) | 0.0414 (7) | |
| H6 | 0.3892 | 0.5851 | 1.1825 | 0.050* | |
| C3 | 0.42814 (12) | 0.9788 (7) | 0.6705 (6) | 0.0364 (6) | |
| H3 | 0.4375 | 1.0848 | 0.5383 | 0.044* | |
| Li1 | 0.2739 (2) | 0.9324 (11) | 1.0354 (10) | 0.0338 (10) | |
| O3 | 0.22904 (9) | 0.6809 (4) | 0.8254 (4) | 0.0282 (4) | |
| H31 | 0.247 (3) | 0.538 (8) | 0.796 (9) | 0.051 (11)* | |
| H32 | 0.1986 (18) | 0.599 (8) | 0.901 (7) | 0.046 (11)* |
| O1 | 0.0283 (8) | 0.0332 (9) | 0.0358 (10) | 0.0041 (8) | 0.0052 (9) | 0.0123 (10) |
| O2 | 0.0369 (11) | 0.0567 (13) | 0.0504 (15) | 0.0051 (10) | 0.0081 (11) | 0.0333 (12) |
| N1 | 0.0324 (12) | 0.0371 (11) | 0.0265 (11) | 0.0009 (10) | 0.0033 (11) | 0.0109 (10) |
| C2 | 0.0244 (10) | 0.0276 (10) | 0.0254 (11) | −0.0016 (10) | 0.0010 (10) | 0.0055 (10) |
| C7 | 0.0288 (11) | 0.0282 (11) | 0.0274 (12) | 0.0006 (10) | 0.0000 (11) | 0.0069 (12) |
| C5 | 0.0361 (16) | 0.0481 (17) | 0.0517 (19) | 0.0118 (14) | −0.0062 (17) | 0.0153 (16) |
| N2 | 0.0333 (13) | 0.0540 (16) | 0.0514 (17) | 0.0105 (12) | 0.0064 (13) | 0.0105 (16) |
| C6 | 0.0388 (16) | 0.0493 (17) | 0.0362 (15) | 0.0036 (13) | −0.0019 (14) | 0.0205 (15) |
| C3 | 0.0311 (13) | 0.0433 (15) | 0.0347 (14) | 0.0014 (12) | 0.0098 (13) | 0.0093 (14) |
| Li1 | 0.036 (3) | 0.040 (2) | 0.026 (2) | −0.002 (2) | 0.001 (2) | 0.007 (2) |
| O3 | 0.0328 (9) | 0.0287 (9) | 0.0230 (8) | −0.0004 (8) | 0.0014 (8) | 0.0075 (9) |
| O1—C7 | 1.269 (4) | N2—C3 | 1.328 (4) |
| Li1—O1 | 2.080 (6) | C6—H6 | 0.9300 |
| O1—Li1i | 2.237 (6) | C3—H3 | 0.9300 |
| O2—C7 | 1.233 (4) | Li1—O3 | 2.013 (6) |
| N1—C6 | 1.337 (4) | Li1—O3ii | 2.032 (5) |
| N1—C2 | 1.340 (4) | Li1—O1ii | 2.237 (6) |
| Li1—N1 | 2.190 (6) | Li1—Li1i | 3.052 (4) |
| C2—C3 | 1.387 (4) | Li1—Li1ii | 3.052 (4) |
| C2—C7 | 1.502 (4) | O3—Li1i | 2.032 (5) |
| C5—N2 | 1.327 (5) | O3—H31 | 0.83 (5) |
| C5—C6 | 1.379 (5) | O3—H32 | 0.94 (4) |
| C5—H5 | 0.9300 | ||
| C7—O1—Li1 | 116.9 (2) | O3—Li1—N1 | 109.2 (3) |
| C7—O1—Li1i | 119.2 (2) | O3ii—Li1—N1 | 96.0 (2) |
| Li1—O1—Li1i | 89.92 (19) | O1—Li1—N1 | 77.8 (2) |
| C6—N1—C2 | 116.0 (3) | O3—Li1—O1ii | 105.9 (3) |
| C6—N1—Li1 | 132.6 (3) | O3ii—Li1—O1ii | 83.2 (2) |
| C2—N1—Li1 | 110.9 (2) | O1—Li1—O1ii | 100.9 (2) |
| N1—C2—C3 | 121.4 (3) | N1—Li1—O1ii | 144.8 (3) |
| N1—C2—C7 | 116.5 (2) | O3—Li1—Li1i | 41.25 (17) |
| C3—C2—C7 | 122.1 (2) | O3ii—Li1—Li1i | 136.9 (2) |
| O2—C7—O1 | 126.1 (3) | O1—Li1—Li1i | 47.12 (13) |
| O2—C7—C2 | 117.1 (3) | N1—Li1—Li1i | 101.1 (2) |
| O1—C7—C2 | 116.8 (2) | O1ii—Li1—Li1i | 103.2 (3) |
| N2—C5—C6 | 122.8 (3) | O3—Li1—Li1ii | 109.5 (3) |
| N2—C5—H5 | 118.6 | O3ii—Li1—Li1ii | 40.79 (14) |
| C6—C5—H5 | 118.6 | O1—Li1—Li1ii | 142.33 (19) |
| C5—N2—C3 | 115.6 (3) | N1—Li1—Li1ii | 123.4 (3) |
| N1—C6—C5 | 121.7 (3) | O1ii—Li1—Li1ii | 42.96 (17) |
| N1—C6—H6 | 119.2 | Li1i—Li1—Li1ii | 135.0 (4) |
| C5—C6—H6 | 119.2 | Li1—O3—Li1i | 98.0 (2) |
| N2—C3—C2 | 122.5 (3) | Li1—O3—H31 | 109 (4) |
| N2—C3—H3 | 118.7 | Li1i—O3—H31 | 110 (3) |
| C2—C3—H3 | 118.7 | Li1—O3—H32 | 114 (3) |
| O3—Li1—O3ii | 95.7 (2) | Li1i—O3—H32 | 126 (2) |
| O3—Li1—O1 | 87.8 (2) | H31—O3—H32 | 100 (4) |
| O3ii—Li1—O1 | 173.7 (3) |
| H··· | ||||
| O3—H31···O1iii | 0.83 (5) | 1.96 (5) | 2.786 (3) | 176 (5) |
| O3—H32···O2iv | 0.94 (4) | 1.75 (4) | 2.672 (3) | 167 (4) |
Selected bond lengths (Å)
| Li1—O1 | 2.080 (6) |
| Li1—N1 | 2.190 (6) |
| Li1—O3 | 2.013 (6) |
| Li1—O3i | 2.032 (5) |
| Li1—O1i | 2.237 (6) |
Symmetry code: (i) .
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H31⋯O1ii | 0.83 (5) | 1.96 (5) | 2.786 (3) | 176 (5) |
| O3—H32⋯O2iii | 0.94 (4) | 1.75 (4) | 2.672 (3) | 167 (4) |
Symmetry codes: (ii) ; (iii) .