Literature DB >> 21522867

trans-Diaqua-(pyridazine-3-carboxyl-ato-κN,O)lithium.

Wojciech Starosta1, Janusz Leciejewicz.   

Abstract

The structure of the title complex, [Li(C(5)H(3)N(2)O(2))(H(2)O)(2)], is built of monomeric mol-ecules. In each, an Li(+) ion is N,O-chelated by the pyridazine-3-carboxyl-ate ligand and two water O atoms. The coordination geometry of the metal ion is distorted tetra-hedral. The monomers are linked by a system of hydrogen bonds in which water mol-ecules act as donors and carboxyl-ate O atoms act as acceptors. O-H⋯N hydrogen bonding is also present.

Entities:  

Year:  2011        PMID: 21522867      PMCID: PMC3051535          DOI: 10.1107/S1600536811000493

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of 3d transition metal complexes with the title ligand, see: Ardiwinata et al. (1989 ▶); Gryz et al. (2003 ▶, 2004 ▶). The structures of complexes with: Mg2+ (Gryz et al., 2006 ▶); Ca2+ (Starosta & Leciejewicz, 2007 ▶); UO2 2+ (Leciejewicz & Starosta, 2009 ▶) and Pb2+ (Starosta & Leciejewicz, 2010 ▶) have been also reported. For the structure of pyridazine-3-carb­oxy­lic acid hydro­chloride, see: Gryz et al. (2003 ▶).

Experimental

Crystal data

[Li(C5H3N2O2)(H2O)2] M = 166.07 Monoclinic, a = 7.4620 (15) Å b = 13.738 (3) Å c = 8.0330 (16) Å β = 112.27 (3)° V = 762.1 (3) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.41 × 0.13 × 0.11 mm

Data collection

Kuma KM-4 four-circle diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008) ▶ T min = 0.972, T max = 0.989 1681 measured reflections 1579 independent reflections 878 reflections with I > 2σ(I) R int = 0.044 3 standard reflections every 200 reflections intensity decay: 0.1%

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.150 S = 0.99 1579 reflections 137 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.30 e Å−3 Data collection: KM-4 Software (Kuma, 1996 ▶); cell refinement: KM-4 Software; data reduction: DATAPROC (Kuma, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811000493/kp2302sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811000493/kp2302Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Li(C5H3N2O2)(H2O)2]F(000) = 344
Mr = 166.07Dx = 1.447 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 7.4620 (15) ÅCell parameters from 3 reflections
b = 13.738 (3) Åθ = 6–15°
c = 8.0330 (16) ŵ = 0.12 mm1
β = 112.27 (3)°T = 293 K
V = 762.1 (3) Å3Blocks, colourless
Z = 40.41 × 0.13 × 0.11 mm
Kuma KM-4 four-circle diffractometer878 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.044
graphiteθmax = 27.1°, θmin = 3.0°
profile data from ω/2θ scansh = 0→9
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008)k = 0→17
Tmin = 0.972, Tmax = 0.989l = −10→8
1681 measured reflections3 standard reflections every 200 reflections
1579 independent reflections intensity decay: 0.1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.150H atoms treated by a mixture of independent and constrained refinement
S = 0.99w = 1/[σ2(Fo2) + (0.1002P)2] where P = (Fo2 + 2Fc2)/3
1579 reflections(Δ/σ)max < 0.001
137 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.5660 (2)0.46534 (12)0.7782 (2)0.0433 (5)
O20.7322 (3)0.35353 (12)0.9796 (2)0.0453 (5)
O30.6476 (3)0.62905 (16)0.5350 (3)0.0504 (5)
N20.7489 (3)0.60891 (13)0.9918 (2)0.0341 (5)
C30.7981 (3)0.51905 (15)1.0537 (3)0.0297 (5)
N10.8297 (3)0.68561 (14)1.0952 (3)0.0436 (5)
C40.9386 (3)0.5005 (2)1.2220 (3)0.0380 (6)
C60.9614 (4)0.6700 (2)1.2587 (3)0.0447 (6)
C70.6887 (3)0.43841 (16)0.9250 (3)0.0331 (5)
C51.0237 (4)0.5780 (2)1.3266 (3)0.0430 (6)
Li10.5577 (6)0.6038 (3)0.7221 (5)0.0411 (9)
H30.974 (4)0.440 (2)1.258 (3)0.043 (7)*
H61.006 (4)0.728 (2)1.330 (3)0.042 (7)*
H410.332 (5)0.741 (3)0.668 (4)0.063 (9)*
O40.3421 (3)0.68308 (15)0.7066 (3)0.0480 (5)
H420.344 (6)0.691 (3)0.811 (6)0.089 (13)*
H320.573 (5)0.604 (2)0.413 (5)0.086 (11)*
H310.678 (6)0.682 (4)0.527 (6)0.108 (17)*
H51.112 (5)0.571 (2)1.441 (4)0.064 (9)*
U11U22U33U12U13U23
O10.0484 (10)0.0356 (9)0.0360 (9)−0.0082 (8)0.0048 (8)−0.0012 (7)
O20.0622 (12)0.0271 (9)0.0441 (10)0.0006 (8)0.0173 (9)−0.0001 (7)
O30.0643 (13)0.0424 (11)0.0410 (10)−0.0133 (10)0.0161 (10)−0.0018 (8)
N20.0328 (11)0.0277 (10)0.0367 (10)0.0018 (8)0.0076 (9)−0.0019 (8)
C30.0279 (10)0.0301 (11)0.0335 (10)0.0011 (9)0.0143 (9)−0.0013 (9)
N10.0438 (12)0.0338 (11)0.0462 (12)−0.0015 (9)0.0094 (10)−0.0071 (9)
C40.0373 (12)0.0388 (13)0.0369 (12)0.0033 (11)0.0129 (10)0.0047 (11)
C60.0440 (15)0.0427 (14)0.0429 (14)−0.0128 (12)0.0114 (12)−0.0120 (11)
C70.0372 (12)0.0318 (12)0.0347 (12)−0.0018 (10)0.0184 (11)−0.0014 (9)
C50.0333 (13)0.0566 (15)0.0328 (13)−0.0066 (12)0.0052 (11)0.0002 (11)
Li10.035 (2)0.043 (2)0.038 (2)−0.0004 (18)0.0061 (18)0.0022 (17)
O40.0532 (12)0.0418 (11)0.0478 (12)0.0100 (9)0.0177 (9)0.0099 (9)
O1—C71.244 (3)N1—C61.326 (3)
O1—Li11.950 (5)C4—C51.357 (4)
O2—C71.245 (3)C4—H30.89 (3)
O3—Li11.896 (5)C6—C51.386 (4)
O3—H320.99 (4)C6—H60.96 (3)
O3—H310.77 (5)C5—H50.91 (3)
N2—C31.329 (3)Li1—O41.907 (5)
N2—N11.336 (3)Li1—H422.31 (4)
N2—Li12.095 (4)O4—H410.85 (4)
C3—C41.385 (3)O4—H420.84 (4)
C3—C71.524 (3)
C7—O1—Li1117.15 (19)C4—C5—C6117.7 (2)
Li1—O3—H32119 (2)C4—C5—H5122 (2)
Li1—O3—H31117 (3)C6—C5—H5120 (2)
H32—O3—H31109 (4)O3—Li1—O4112.8 (2)
C3—N2—N1120.27 (18)O3—Li1—O1111.8 (2)
C3—N2—Li1109.80 (18)O4—Li1—O1121.6 (2)
N1—N2—Li1129.77 (18)O3—Li1—N2120.4 (2)
N2—C3—C4122.4 (2)O4—Li1—N2106.0 (2)
N2—C3—C7114.86 (19)O1—Li1—N281.06 (16)
C4—C3—C7122.7 (2)O3—Li1—C7117.9 (2)
C6—N1—N2118.6 (2)O4—Li1—C7127.7 (2)
C5—C4—C3117.6 (2)O1—Li1—C723.74 (9)
C5—C4—H3121.3 (17)N2—Li1—C757.68 (11)
C3—C4—H3121.0 (17)O3—Li1—H42129.8 (11)
N1—C6—C5123.3 (2)O4—Li1—H4220.1 (10)
N1—C6—H6114.9 (15)O1—Li1—H42113.7 (10)
C5—C6—H6121.7 (15)N2—Li1—H4286.7 (10)
O1—C7—O2127.8 (2)C7—Li1—H42112.3 (11)
O1—C7—C3116.06 (19)Li1—O4—H41121 (2)
O2—C7—C3116.2 (2)Li1—O4—H42108 (3)
O2—C7—Li1165.72 (18)H41—O4—H42102 (3)
C3—C7—Li177.30 (15)
D—H···AD—HH···AD···AD—H···A
O4—H41···O2i0.85 (4)1.90 (4)2.720 (3)164 (3)
O4—H42···O2ii0.84 (4)2.07 (4)2.823 (3)150 (4)
O3—H32···O1iii0.99 (4)1.77 (4)2.741 (3)167 (3)
O3—H31···N1iv0.77 (5)2.10 (5)2.840 (3)160 (5)
Table 1

Selected bond lengths (Å)

O1—Li11.950 (5)
O3—Li11.896 (5)
N2—Li12.095 (4)
Li1—O41.907 (5)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H41⋯O2i0.85 (4)1.90 (4)2.720 (3)164 (3)
O4—H42⋯O2ii0.84 (4)2.07 (4)2.823 (3)150 (4)
O3—H32⋯O1iii0.99 (4)1.77 (4)2.741 (3)167 (3)
O3—H31⋯N1iv0.77 (5)2.10 (5)2.840 (3)160 (5)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Bis(μ-pyridazine-3-carboxyl-ato-κO:O')bis-[aqua-dioxido(pyridazine-3-carboxyl-ato-κN,O)uranium(VI)] dihydrate.

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3.  catena-Poly[lead(II)-bis-(μ(2)-pyridazine-3-carboxyl-ato-κN,O:O)].

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  3 in total
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1.  Poly[aqua-(μ(3)-pyridazine-4-carboxyl-ato-κO:O:O')lithium].

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-12

2.  Poly[di-μ(2)-aqua-μ(2)-(5-methyl-pyrazine-2-carboxyl-ato)-(5-methyl-pyrazine-2-carboxyl-ato)-μ(3)-nitrato-trilithium].

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-30

3.  Poly[μ(2)-aqua-μ(2)-(pyrazine-2-carboxyl-ato)-lithium].

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16
  3 in total

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