Literature DB >> 21754689

Poly[(μ(2)-nitrato-κO:O')(μ(2)-pyrimidin-ium-2-carboxyl-ato-κO:O')lithium(I)].

Wojciech Starosta1, Janusz Leciejewicz.   

Abstract

In the structure of the title compound, [Li(C(5)H(4)N(2)O(2))(NO(3))](n), the Li(I) ion is coordinated by two carboxyl-ate O atoms donated by two ligands and two nitrate O atoms in a distorted tetrahedral geometry. Li(I) ions, bridged by carboxyl-ate O atoms, form mol-ecular ribbons composed of dimeric units. Two nitrate O atoms link the ribbons into mol-ecular layers parallel to (001). Hydrogen bonds are active between protonated heterocyclic N atoms as donors and carboxyl-ate O atoms as acceptors. The layers are held together by van der Waals inter-actions.

Entities:  

Year:  2011        PMID: 21754689      PMCID: PMC3120533          DOI: 10.1107/S1600536811019520

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the polymeric structures of some metal complexes with a pyrimidine-2-carboxyl­ate ligand, see: Rodríguez-Diéguez et al. (2007 ▶, 2008 ▶); Zhao & Liu (2010 ▶); Zhang et al. (2008a ▶). For structures built of monomeric mol­ecules, see: Kokunov & Gorbunova (2007 ▶); Antolić et al. (2000 ▶); Zhang et al. (2008b ▶); Suares-Varela et al. (2008 ▶).

Experimental

Crystal data

[Li(C5H4N2O2)(NO3)] M = 193.05 Orthorhombic, a = 12.403 (3) Å b = 9.3290 (19) Å c = 12.810 (3) Å V = 1482.2 (5) Å3 Z = 8 Mo Kα radiation μ = 0.15 mm−1 T = 293 K 0.49 × 0.48 × 0.14 mm

Data collection

Kuma KM-4 four-circle diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction,2008 ▶) T min = 0.782, T max = 0.939 4248 measured reflections 2179 independent reflections 1504 reflections with I > 2σ(I) R int = 0.158 3 standard reflections every 200 reflections intensity decay: 3.8%

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.153 S = 0.97 2179 reflections 131 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.32 e Å−3 Data collection: KM-4 Software (Kuma, 1996 ▶); cell refinement: KM-4 Software; data reduction: DATAPROC (Kuma, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811019520/kp2322sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811019520/kp2322Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Li(C5H4N2O2)(NO3)]F(000) = 784
Mr = 193.05Dx = 1.730 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 25 reflections
a = 12.403 (3) Åθ = 6–15°
b = 9.3290 (19) ŵ = 0.15 mm1
c = 12.810 (3) ÅT = 293 K
V = 1482.2 (5) Å3Plates, colorless
Z = 80.49 × 0.48 × 0.14 mm
Kuma KM-4 four-circle diffractometer1504 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.158
graphiteθmax = 30.1°, θmin = 3.2°
profile data from ω/2θ scansh = 0→17
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction,2008)k = 0→13
Tmin = 0.782, Tmax = 0.939l = −18→18
4248 measured reflections3 standard reflections every 200 reflections
2179 independent reflections intensity decay: 3.8%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.153H atoms treated by a mixture of independent and constrained refinement
S = 0.97w = 1/[σ2(Fo2) + (0.0702P)2 + 0.2975P] where P = (Fo2 + 2Fc2)/3
2179 reflections(Δ/σ)max < 0.001
131 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N20.61057 (10)0.04538 (11)0.35126 (12)0.0250 (3)
O10.71796 (9)0.39321 (10)0.32671 (12)0.0323 (3)
O110.47373 (9)0.63026 (13)0.36709 (13)0.0400 (4)
N10.52999 (10)0.27071 (12)0.37133 (13)0.0294 (3)
C20.61507 (11)0.18883 (13)0.35586 (13)0.0236 (3)
N110.38359 (10)0.62115 (13)0.40961 (13)0.0300 (3)
C40.51530 (13)−0.02147 (14)0.35905 (15)0.0290 (4)
H40.5115−0.12080.35380.035*
O20.80624 (9)0.18762 (11)0.35001 (13)0.0378 (4)
C70.72441 (11)0.26027 (14)0.34338 (14)0.0258 (3)
C50.42357 (12)0.05728 (16)0.37473 (16)0.0332 (4)
H50.35650.01350.38060.040*
C60.43471 (12)0.20546 (16)0.38159 (17)0.0350 (4)
H60.37370.26100.39370.042*
O120.35866 (13)0.51255 (13)0.45999 (13)0.0464 (4)
O130.32128 (12)0.72177 (17)0.4017 (2)0.0755 (7)
Li10.6045 (2)0.5149 (3)0.3893 (3)0.0362 (7)
H20.671 (2)−0.005 (3)0.339 (2)0.044 (6)*
U11U22U33U12U13U23
N20.0196 (5)0.0171 (5)0.0382 (8)−0.0002 (4)−0.0020 (5)−0.0003 (5)
O10.0227 (5)0.0175 (4)0.0567 (8)−0.0023 (3)0.0012 (5)0.0000 (4)
O110.0233 (6)0.0398 (6)0.0568 (10)0.0039 (4)0.0078 (5)0.0067 (6)
N10.0190 (6)0.0212 (5)0.0479 (9)0.0021 (4)−0.0008 (5)−0.0048 (5)
C20.0200 (6)0.0184 (5)0.0323 (8)−0.0005 (4)−0.0018 (6)−0.0018 (5)
N110.0230 (6)0.0287 (6)0.0384 (8)−0.0003 (4)−0.0009 (6)0.0007 (5)
C40.0260 (7)0.0200 (5)0.0410 (10)−0.0042 (5)−0.0013 (7)0.0014 (5)
O20.0183 (5)0.0241 (5)0.0710 (10)0.0023 (4)0.0002 (6)0.0032 (5)
C70.0199 (6)0.0186 (5)0.0388 (8)−0.0011 (4)−0.0017 (6)−0.0029 (5)
C50.0193 (6)0.0304 (6)0.0499 (11)−0.0065 (5)−0.0018 (7)0.0000 (7)
C60.0191 (6)0.0308 (7)0.0551 (12)0.0021 (5)0.0020 (7)−0.0064 (7)
O120.0557 (8)0.0362 (6)0.0474 (9)−0.0142 (6)0.0041 (8)0.0043 (6)
O130.0321 (7)0.0554 (8)0.139 (2)0.0210 (6)0.0136 (10)0.0267 (11)
Li10.0294 (13)0.0305 (11)0.0486 (19)0.0042 (10)0.0029 (13)0.0051 (12)
N2—C41.3399 (19)N11—O121.2404 (18)
N2—C21.3406 (16)C4—C51.369 (2)
N2—H20.90 (3)C4—H40.9300
O1—C71.2610 (16)O2—C71.2234 (17)
O1—Li11.978 (3)O2—Li1i2.019 (3)
O11—N111.2466 (18)C5—C61.392 (2)
O11—Li11.967 (3)C5—H50.9300
N1—C21.3178 (18)C6—H60.9300
N1—C61.3357 (19)O12—Li1ii2.001 (4)
N1—Li12.469 (3)Li1—O12ii2.001 (4)
C2—C71.5194 (19)Li1—O2iii2.019 (3)
N11—O131.2201 (18)
C4—N2—C2119.87 (13)O2—C7—C2119.35 (12)
C4—N2—H2120.5 (15)O1—C7—C2113.12 (11)
C2—N2—H2119.5 (15)C4—C5—C6117.36 (14)
C7—O1—Li1122.76 (14)C4—C5—H5121.3
N11—O11—Li1129.73 (15)C6—C5—H5121.3
C2—N1—C6117.33 (11)N1—C6—C5122.29 (14)
C2—N1—Li1104.42 (11)N1—C6—H6118.9
C6—N1—Li1137.95 (11)C5—C6—H6118.9
N1—C2—N2123.50 (13)N11—O12—Li1ii123.35 (15)
N1—C2—C7118.44 (11)O11—Li1—O1147.4 (2)
N2—C2—C7118.06 (12)O11—Li1—O12ii113.43 (18)
O13—N11—O12120.90 (16)O1—Li1—O12ii98.94 (15)
O13—N11—O11118.66 (15)O11—Li1—O2iii88.82 (12)
O12—N11—O11120.44 (14)O1—Li1—O2iii88.11 (14)
N2—C4—C5119.61 (12)O12ii—Li1—O2iii102.57 (16)
N2—C4—H4120.2O11—Li1—N1100.51 (13)
C5—C4—H4120.2O1—Li1—N172.49 (10)
C7—O2—Li1i156.13 (14)O12ii—Li1—N193.28 (13)
O2—C7—O1127.53 (13)O2iii—Li1—N1156.71 (19)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.90 (3)1.68 (3)2.5762 (17)174 (3)
Table 1

Selected bond lengths (Å)

O1—Li11.978 (3)
O11—Li11.967 (3)
Li1—O12i2.001 (4)
Li1—O2ii2.019 (3)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1iii0.90 (3)1.68 (3)2.5762 (17)174 (3)

Symmetry code: (iii) .

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