| Literature DB >> 21587683 |
Wojciech Starosta1, Janusz Leciejewicz.
Abstract
The title compound, [Li(C(5)H(4)N(3)O(2))(H(2)O)](n), is composed of centrosymmetric dinuclear units, in which the Li(I) ions are bridged by two carboxyl-ate O atoms donated by two ligands. The dinuclear unit is nearly planar [r.m.s. deviation = 0.0125 (2) Å]. The Li(I) ion is coordinated by an N,O-chelating ligand, a bridging carboxyl-ate O atom from another ligand and two bridging water O atoms in a distorted trigonal-bipyra-midal geometry. The water O atoms bridge the dinuclear units into a polymeric mol-ecular column along [010]. The columns are held together by O-H⋯O and N-H⋯N hydrogen bonds. An intra-molecular N-H⋯O inter-action also occurs.Entities:
Year: 2010 PMID: 21587683 PMCID: PMC3006785 DOI: 10.1107/S1600536810020647
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Li(C5H4N3O2)(H2O)] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
| θ = 6–15° | |
| µ = 0.13 mm−1 | |
| β = 106.43 (3)° | Plate, colourless |
| 0.26 × 0.21 × 0.04 mm | |
| Kuma KM-4 four-circle diffractometer | 1297 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 30.1°, θmin = 1.5° |
| profile data from ω–2θ scans | |
| Absorption correction: analytical ( | |
| 1997 measured reflections | 3 standard reflections every 200 reflections |
| 1913 independent reflections | intensity decay: 7.3% |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1913 reflections | (Δ/σ)max < 0.001 |
| 115 parameters | Δρmax = 0.51 e Å−3 |
| 3 restraints | Δρmin = −0.39 e Å−3 |
| C2 | 0.25443 (8) | 0.4711 (3) | 0.39664 (9) | 0.0184 (3) | |
| O2 | 0.32090 (8) | 0.2294 (4) | 0.26435 (8) | 0.0336 (3) | |
| N1 | 0.27984 (8) | 0.6065 (3) | 0.49343 (8) | 0.0216 (3) | |
| N2 | 0.08397 (8) | 0.5364 (4) | 0.38343 (10) | 0.0285 (3) | |
| N3 | 0.12597 (9) | 0.2931 (4) | 0.24154 (10) | 0.0320 (3) | |
| H2 | 0.0649 | 0.2745 | 0.2090 | 0.038* | |
| H1 | 0.1690 | 0.2235 | 0.2115 | 0.038* | |
| O1 | 0.42229 (7) | 0.4275 (4) | 0.41421 (8) | 0.0352 (3) | |
| C7 | 0.33887 (9) | 0.3657 (4) | 0.35429 (10) | 0.0218 (3) | |
| C3 | 0.15415 (9) | 0.4307 (4) | 0.33936 (10) | 0.0217 (3) | |
| C6 | 0.20958 (10) | 0.7070 (4) | 0.53653 (11) | 0.0254 (3) | |
| H6 | 0.2262 | 0.8010 | 0.6044 | 0.030* | |
| C5 | 0.11268 (10) | 0.6720 (4) | 0.48077 (12) | 0.0284 (3) | |
| H5 | 0.0653 | 0.7459 | 0.5123 | 0.034* | |
| Li1 | 0.43334 (19) | 0.6091 (9) | 0.5591 (2) | 0.0370 (6) | |
| O3 | 0.44058 (8) | 1.0866 (3) | 0.64699 (9) | 0.0338 (3) | |
| H32 | 0.4986 (11) | 1.117 (6) | 0.6825 (15) | 0.041* | |
| H31 | 0.4047 (13) | 1.146 (6) | 0.6882 (14) | 0.041* |
| C2 | 0.0170 (5) | 0.0153 (5) | 0.0223 (6) | −0.0007 (4) | 0.0048 (4) | 0.0018 (4) |
| O2 | 0.0301 (5) | 0.0450 (7) | 0.0277 (5) | −0.0089 (5) | 0.0114 (4) | −0.0120 (5) |
| N1 | 0.0209 (5) | 0.0192 (5) | 0.0242 (5) | 0.0012 (4) | 0.0057 (4) | −0.0006 (4) |
| N2 | 0.0194 (5) | 0.0264 (6) | 0.0390 (6) | 0.0012 (4) | 0.0071 (4) | 0.0025 (5) |
| N3 | 0.0227 (5) | 0.0401 (7) | 0.0290 (6) | −0.0056 (5) | 0.0002 (4) | −0.0052 (5) |
| O1 | 0.0183 (5) | 0.0522 (7) | 0.0338 (5) | 0.0004 (5) | 0.0052 (4) | −0.0142 (5) |
| C7 | 0.0202 (6) | 0.0209 (6) | 0.0242 (5) | −0.0021 (4) | 0.0064 (4) | −0.0015 (5) |
| C3 | 0.0199 (5) | 0.0171 (5) | 0.0262 (6) | −0.0019 (4) | 0.0033 (4) | 0.0034 (5) |
| C6 | 0.0282 (6) | 0.0225 (7) | 0.0273 (6) | 0.0020 (5) | 0.0108 (5) | −0.0020 (5) |
| C5 | 0.0238 (6) | 0.0237 (7) | 0.0408 (8) | 0.0031 (5) | 0.0140 (5) | 0.0006 (6) |
| Li1 | 0.0256 (12) | 0.0484 (17) | 0.0355 (13) | 0.0016 (11) | 0.0060 (10) | −0.0120 (12) |
| O3 | 0.0256 (5) | 0.0411 (7) | 0.0352 (6) | −0.0012 (5) | 0.0092 (4) | −0.0069 (5) |
| C2—N1 | 1.3274 (16) | C6—C5 | 1.378 (2) |
| C2—C3 | 1.4263 (17) | C6—H6 | 0.9300 |
| C2—C7 | 1.5164 (17) | C5—H5 | 0.9300 |
| O2—C7 | 1.2505 (17) | Li1—N1 | 2.118 (3) |
| N1—C6 | 1.3385 (17) | Li1—O1 | 1.999 (3) |
| N2—C5 | 1.335 (2) | Li1—O1i | 1.995 (3) |
| N2—C3 | 1.3510 (18) | Li1—O3 | 2.065 (3) |
| N3—C3 | 1.3431 (18) | Li1—O3ii | 2.201 (3) |
| N3—H2 | 0.8600 | Li1—Li1i | 2.900 (5) |
| N3—H1 | 0.8600 | O3—H32 | 0.837 (15) |
| O1—C7 | 1.2515 (17) | O3—H31 | 0.875 (14) |
| N1—C2—C3 | 120.87 (11) | N2—C5—H5 | 118.6 |
| N1—C2—C7 | 115.10 (11) | C6—C5—H5 | 118.6 |
| C3—C2—C7 | 124.03 (11) | O1i—Li1—O1 | 86.88 (11) |
| C2—N1—C6 | 118.83 (11) | O1i—Li1—O3 | 94.05 (12) |
| C2—N1—Li1 | 111.64 (11) | O1—Li1—O3 | 142.73 (18) |
| C6—N1—Li1 | 129.48 (11) | O1i—Li1—N1 | 165.94 (15) |
| C5—N2—C3 | 117.50 (11) | O1—Li1—N1 | 79.08 (10) |
| C3—N3—H2 | 120.0 | O3—Li1—N1 | 96.74 (12) |
| C3—N3—H1 | 120.0 | O1i—Li1—O3ii | 87.61 (12) |
| H2—N3—H1 | 120.0 | O1—Li1—O3ii | 102.21 (14) |
| C7—O1—Li1i | 148.32 (12) | O3—Li1—O3ii | 115.07 (14) |
| C7—O1—Li1 | 118.26 (11) | N1—Li1—O3ii | 95.90 (13) |
| Li1i—O1—Li1 | 93.13 (11) | O1i—Li1—Li1i | 43.49 (8) |
| O2—C7—O1 | 125.43 (12) | O1—Li1—Li1i | 43.38 (8) |
| O2—C7—C2 | 118.94 (12) | O3—Li1—Li1i | 126.66 (18) |
| O1—C7—C2 | 115.63 (11) | N1—Li1—Li1i | 122.46 (16) |
| N3—C3—N2 | 117.93 (12) | O3ii—Li1—Li1i | 96.72 (16) |
| N3—C3—C2 | 122.37 (12) | Li1—O3—Li1iii | 115.07 (14) |
| N2—C3—C2 | 119.69 (12) | Li1—O3—H32 | 108.2 (15) |
| N1—C6—C5 | 120.32 (12) | Li1iii—O3—H32 | 94.4 (16) |
| N1—C6—H6 | 119.8 | Li1—O3—H31 | 127.7 (15) |
| C5—C6—H6 | 119.8 | Li1iii—O3—H31 | 100.2 (15) |
| N2—C5—C6 | 122.78 (13) | H32—O3—H31 | 106.0 (15) |
| H··· | ||||
| O3—H31···O2iv | 0.88 (1) | 1.83 (1) | 2.7028 (16) | 175 (2) |
| O3—H32···O1v | 0.84 (2) | 2.54 (2) | 2.9083 (17) | 108 (2) |
| N3—H1···O2 | 0.86 | 2.08 | 2.7229 (17) | 131 |
| N3—H2···N2vi | 0.86 | 2.30 | 3.1278 (19) | 162 |
Selected bond lengths (Å)
| Li1—N1 | 2.118 (3) |
| Li1—O1 | 1.999 (3) |
| Li1—O1i | 1.995 (3) |
| Li1—O3 | 2.065 (3) |
| Li1—O3ii | 2.201 (3) |
Symmetry codes: (i) ; (ii) .
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H31⋯O2iii | 0.88 (1) | 1.83 (1) | 2.7028 (16) | 175 (2) |
| O3—H32⋯O1iv | 0.84 (2) | 2.54 (2) | 2.9083 (17) | 108 (2) |
| N3—H1⋯O2 | 0.86 | 2.08 | 2.7229 (17) | 131 |
| N3—H2⋯N2v | 0.86 | 2.30 | 3.1278 (19) | 162 |
Symmetry codes: (iii) ; (iv) ; (v) .