Literature DB >> 21587683

catena-Poly[[bis-(μ-3-amino-pyrazine-2-carboxyl-ato)-κN,O:O;κO:N,O)dilithium]-di-μ-aqua].

Wojciech Starosta1, Janusz Leciejewicz.   

Abstract

The title compound, [Li(C(5)H(4)N(3)O(2))(H(2)O)](n), is composed of centrosymmetric dinuclear units, in which the Li(I) ions are bridged by two carboxyl-ate O atoms donated by two ligands. The dinuclear unit is nearly planar [r.m.s. deviation = 0.0125 (2) Å]. The Li(I) ion is coordinated by an N,O-chelating ligand, a bridging carboxyl-ate O atom from another ligand and two bridging water O atoms in a distorted trigonal-bipyra-midal geometry. The water O atoms bridge the dinuclear units into a polymeric mol-ecular column along [010]. The columns are held together by O-H⋯O and N-H⋯N hydrogen bonds. An intra-molecular N-H⋯O inter-action also occurs.

Entities:  

Year:  2010        PMID: 21587683      PMCID: PMC3006785          DOI: 10.1107/S1600536810020647

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of metal (M) complexes with the 3-amino­pyrazine-2-carboxyl­ate ligand, see: Leciejewicz et al. (1997 ▶ [M = Ca(II)], 1998 ▶ [M = Sr(II)]); Ptasiewicz-Bąk & Leciejewicz (1997 ▶ [M = Mg(II)], 1999 ▶ [M = Ni(II)]); Tayebee et al. (2008 ▶) [M = Na(I)]. For the structure of an Li(I) complex with pyrazine-2,3-dicarboxyl­ate and aqua ligands, see: Tombul et al. (2008 ▶).

Experimental

Crystal data

[Li(C5H4N3O2)(H2O)] M = 163.07 Monoclinic, a = 14.279 (3) Å b = 3.6000 (7) Å c = 13.300 (3) Å β = 106.43 (3)° V = 655.7 (2) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.26 × 0.21 × 0.04 mm

Data collection

Kuma KM-4 four-circle diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.980, T max = 0.994 1997 measured reflections 1913 independent reflections 1297 reflections with I > 2σ(I) R int = 0.017 3 standard reflections every 200 reflections intensity decay: 7.3%

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.147 S = 1.04 1913 reflections 115 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.51 e Å−3 Δρmin = −0.39 e Å−3 Data collection: KM-4 Software (Kuma, 1996 ▶); cell refinement: KM-4 Software; data reduction: DATAPROC (Kuma, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810020647/hy2312sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810020647/hy2312Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Li(C5H4N3O2)(H2O)]F(000) = 336
Mr = 163.07Dx = 1.652 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 14.279 (3) Åθ = 6–15°
b = 3.6000 (7) ŵ = 0.13 mm1
c = 13.300 (3) ÅT = 293 K
β = 106.43 (3)°Plate, colourless
V = 655.7 (2) Å30.26 × 0.21 × 0.04 mm
Z = 4
Kuma KM-4 four-circle diffractometer1297 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.017
graphiteθmax = 30.1°, θmin = 1.5°
profile data from ω–2θ scansh = −19→19
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2006)k = −5→0
Tmin = 0.980, Tmax = 0.994l = 0→18
1997 measured reflections3 standard reflections every 200 reflections
1913 independent reflections intensity decay: 7.3%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.147H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.1051P)2 + 0.022P] where P = (Fo2 + 2Fc2)/3
1913 reflections(Δ/σ)max < 0.001
115 parametersΔρmax = 0.51 e Å3
3 restraintsΔρmin = −0.39 e Å3
xyzUiso*/Ueq
C20.25443 (8)0.4711 (3)0.39664 (9)0.0184 (3)
O20.32090 (8)0.2294 (4)0.26435 (8)0.0336 (3)
N10.27984 (8)0.6065 (3)0.49343 (8)0.0216 (3)
N20.08397 (8)0.5364 (4)0.38343 (10)0.0285 (3)
N30.12597 (9)0.2931 (4)0.24154 (10)0.0320 (3)
H20.06490.27450.20900.038*
H10.16900.22350.21150.038*
O10.42229 (7)0.4275 (4)0.41421 (8)0.0352 (3)
C70.33887 (9)0.3657 (4)0.35429 (10)0.0218 (3)
C30.15415 (9)0.4307 (4)0.33936 (10)0.0217 (3)
C60.20958 (10)0.7070 (4)0.53653 (11)0.0254 (3)
H60.22620.80100.60440.030*
C50.11268 (10)0.6720 (4)0.48077 (12)0.0284 (3)
H50.06530.74590.51230.034*
Li10.43334 (19)0.6091 (9)0.5591 (2)0.0370 (6)
O30.44058 (8)1.0866 (3)0.64699 (9)0.0338 (3)
H320.4986 (11)1.117 (6)0.6825 (15)0.041*
H310.4047 (13)1.146 (6)0.6882 (14)0.041*
U11U22U33U12U13U23
C20.0170 (5)0.0153 (5)0.0223 (6)−0.0007 (4)0.0048 (4)0.0018 (4)
O20.0301 (5)0.0450 (7)0.0277 (5)−0.0089 (5)0.0114 (4)−0.0120 (5)
N10.0209 (5)0.0192 (5)0.0242 (5)0.0012 (4)0.0057 (4)−0.0006 (4)
N20.0194 (5)0.0264 (6)0.0390 (6)0.0012 (4)0.0071 (4)0.0025 (5)
N30.0227 (5)0.0401 (7)0.0290 (6)−0.0056 (5)0.0002 (4)−0.0052 (5)
O10.0183 (5)0.0522 (7)0.0338 (5)0.0004 (5)0.0052 (4)−0.0142 (5)
C70.0202 (6)0.0209 (6)0.0242 (5)−0.0021 (4)0.0064 (4)−0.0015 (5)
C30.0199 (5)0.0171 (5)0.0262 (6)−0.0019 (4)0.0033 (4)0.0034 (5)
C60.0282 (6)0.0225 (7)0.0273 (6)0.0020 (5)0.0108 (5)−0.0020 (5)
C50.0238 (6)0.0237 (7)0.0408 (8)0.0031 (5)0.0140 (5)0.0006 (6)
Li10.0256 (12)0.0484 (17)0.0355 (13)0.0016 (11)0.0060 (10)−0.0120 (12)
O30.0256 (5)0.0411 (7)0.0352 (6)−0.0012 (5)0.0092 (4)−0.0069 (5)
C2—N11.3274 (16)C6—C51.378 (2)
C2—C31.4263 (17)C6—H60.9300
C2—C71.5164 (17)C5—H50.9300
O2—C71.2505 (17)Li1—N12.118 (3)
N1—C61.3385 (17)Li1—O11.999 (3)
N2—C51.335 (2)Li1—O1i1.995 (3)
N2—C31.3510 (18)Li1—O32.065 (3)
N3—C31.3431 (18)Li1—O3ii2.201 (3)
N3—H20.8600Li1—Li1i2.900 (5)
N3—H10.8600O3—H320.837 (15)
O1—C71.2515 (17)O3—H310.875 (14)
N1—C2—C3120.87 (11)N2—C5—H5118.6
N1—C2—C7115.10 (11)C6—C5—H5118.6
C3—C2—C7124.03 (11)O1i—Li1—O186.88 (11)
C2—N1—C6118.83 (11)O1i—Li1—O394.05 (12)
C2—N1—Li1111.64 (11)O1—Li1—O3142.73 (18)
C6—N1—Li1129.48 (11)O1i—Li1—N1165.94 (15)
C5—N2—C3117.50 (11)O1—Li1—N179.08 (10)
C3—N3—H2120.0O3—Li1—N196.74 (12)
C3—N3—H1120.0O1i—Li1—O3ii87.61 (12)
H2—N3—H1120.0O1—Li1—O3ii102.21 (14)
C7—O1—Li1i148.32 (12)O3—Li1—O3ii115.07 (14)
C7—O1—Li1118.26 (11)N1—Li1—O3ii95.90 (13)
Li1i—O1—Li193.13 (11)O1i—Li1—Li1i43.49 (8)
O2—C7—O1125.43 (12)O1—Li1—Li1i43.38 (8)
O2—C7—C2118.94 (12)O3—Li1—Li1i126.66 (18)
O1—C7—C2115.63 (11)N1—Li1—Li1i122.46 (16)
N3—C3—N2117.93 (12)O3ii—Li1—Li1i96.72 (16)
N3—C3—C2122.37 (12)Li1—O3—Li1iii115.07 (14)
N2—C3—C2119.69 (12)Li1—O3—H32108.2 (15)
N1—C6—C5120.32 (12)Li1iii—O3—H3294.4 (16)
N1—C6—H6119.8Li1—O3—H31127.7 (15)
C5—C6—H6119.8Li1iii—O3—H31100.2 (15)
N2—C5—C6122.78 (13)H32—O3—H31106.0 (15)
D—H···AD—HH···AD···AD—H···A
O3—H31···O2iv0.88 (1)1.83 (1)2.7028 (16)175 (2)
O3—H32···O1v0.84 (2)2.54 (2)2.9083 (17)108 (2)
N3—H1···O20.862.082.7229 (17)131
N3—H2···N2vi0.862.303.1278 (19)162
Table 1

Selected bond lengths (Å)

Li1—N12.118 (3)
Li1—O11.999 (3)
Li1—O1i1.995 (3)
Li1—O32.065 (3)
Li1—O3ii2.201 (3)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H31⋯O2iii0.88 (1)1.83 (1)2.7028 (16)175 (2)
O3—H32⋯O1iv0.84 (2)2.54 (2)2.9083 (17)108 (2)
N3—H1⋯O20.862.082.7229 (17)131
N3—H2⋯N2v0.862.303.1278 (19)162

Symmetry codes: (iii) ; (iv) ; (v) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Poly[triaquabis-(μ(2)-3-carboxy-pyrazine-2-carboxyl-ato)dilithium(I)].

Authors:  Mustafa Tombul; Kutalmış Güven; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-20
  2 in total
  3 in total

1.  Poly[di-μ-aqua-μ(4)-(pyrazine-2,5-dicarboxyl-ato)-dilithium(I)].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-08

2.  Poly[di-μ(2)-aqua-μ(2)-(5-methyl-pyrazine-2-carboxyl-ato)-(5-methyl-pyrazine-2-carboxyl-ato)-μ(3)-nitrato-trilithium].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-30

3.  Poly[μ(2)-aqua-μ(2)-(pyrazine-2-carboxyl-ato)-lithium].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16
  3 in total

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