Literature DB >> 21753953

Poly[aqua-(μ(3)-pyridazine-4-carboxyl-ato-κO:O:O')lithium].

Wojciech Starosta1, Janusz Leciejewicz.   

Abstract

The structure of the title compound, [Li(C(5)H(3)N(2)O(2))(H(2)O)](n), is composed of centrosymmetric dimers in which two Li(I) ions are bridged by a carboxyl-ate O atom, each donated by a ligand, acting in a bidentate mode. The second carboxyl-ato O atoms bridge the dimers to Li(I) ions in adjacent dimers, forming mol-ecular layers parallel to (001). Each Li(I) ion is coordinated by two bridging carboxyl-ate O atoms, a bridging carboxyl-ate O atom donated by the adjacent dimer and an aqua O atom, resulting in a distorted tetra-hedral coordination geometry. The layers are held together by O-H⋯N hydrogen bonds in which coordinated water O atoms act as donors and ligand hetero-ring N atoms as acceptors.

Entities:  

Year:  2011        PMID: 21753953      PMCID: PMC3099971          DOI: 10.1107/S1600536811008634

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of a Pb(II) complex with pyridazine-4-carboxyl­ate and water ligands, see: Starosta & Leciejewicz, (2009 ▶) and for the structure of a Mg(II) complex, see: Starosta & Leciejewicz, (2011b ▶). For the structure of pyridazine-4-carb­oxy­lic acid hydro­chloride, see: Starosta & Leciejewicz, (2008 ▶) and for the structure of a LiI complex with pyridazine-3-carboxyl­ate and water ligands, see: Starosta & Leciejewicz, (2011a ▶).

Experimental

Crystal data

[Li(C5H3N2O2)(H2O)] M = 148.05 Monoclinic, a = 8.1673 (16) Å b = 9.6908 (19) Å c = 8.0248 (16) Å β = 97.08 (3)° V = 630.3 (2) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.30 × 0.28 × 0.12 mm

Data collection

Kuma KM-4 four-circle diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008) ▶ T min = 0.946, T max = 0.973 1958 measured reflections 1843 independent reflections 1208 reflections with I > 2σ(I) R int = 0.077 3 standard reflections every 200 reflections intensity decay: 2.1%

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.128 S = 1.02 1843 reflections 108 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.28 e Å−3 Data collection: KM-4 Software (Kuma, 1996 ▶); cell refinement: KM-4 Software; data reduction: DATAPROC (Kuma, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811008634/kp2313sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811008634/kp2313Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Li(C5H3N2O2)(H2O)]F(000) = 304
Mr = 148.05Dx = 1.560 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 8.1673 (16) Åθ = 6–15°
b = 9.6908 (19) ŵ = 0.13 mm1
c = 8.0248 (16) ÅT = 293 K
β = 97.08 (3)°Plates, colourless
V = 630.3 (2) Å30.30 × 0.28 × 0.12 mm
Z = 4
Kuma KM-4 four-circle diffractometer1208 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.077
graphiteθmax = 30.1°, θmin = 2.5°
profile data from ω/2θ scansh = 0→11
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008)k = −13→0
Tmin = 0.946, Tmax = 0.973l = −11→11
1958 measured reflections3 standard reflections every 200 reflections
1843 independent reflections intensity decay: 2.1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0832P)2 + 0.0472P] where P = (Fo2 + 2Fc2)/3
1843 reflections(Δ/σ)max < 0.001
108 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.03194 (12)0.42855 (10)0.15091 (11)0.0264 (2)
C40.18403 (15)0.37648 (13)0.41306 (14)0.0210 (2)
O2−0.03510 (14)0.24156 (11)0.28565 (13)0.0369 (3)
N20.40511 (15)0.28845 (14)0.60951 (16)0.0334 (3)
C70.04912 (15)0.34645 (12)0.27196 (15)0.0210 (3)
C60.33735 (19)0.51936 (16)0.61350 (17)0.0316 (3)
H60.35510.60580.66290.038*
N10.42945 (15)0.41548 (14)0.67579 (15)0.0334 (3)
C30.28349 (16)0.26953 (14)0.48590 (16)0.0263 (3)
H30.26330.18040.44550.032*
C50.21451 (17)0.50626 (14)0.47709 (16)0.0262 (3)
H50.15590.58250.43160.031*
Li1−0.1023 (3)0.3958 (2)−0.0663 (3)0.0264 (5)
O3−0.33301 (14)0.39117 (15)−0.04432 (15)0.0415 (3)
H31−0.389 (4)0.354 (3)0.027 (3)0.075 (8)*
H32−0.403 (4)0.403 (3)−0.133 (4)0.075 (8)*
U11U22U33U12U13U23
O10.0337 (5)0.0224 (5)0.0208 (4)−0.0029 (3)−0.0062 (3)0.0050 (3)
C40.0245 (5)0.0214 (5)0.0163 (5)−0.0005 (4)−0.0008 (4)0.0011 (4)
O20.0491 (6)0.0269 (5)0.0311 (5)−0.0160 (4)−0.0099 (4)0.0068 (4)
N20.0301 (6)0.0370 (7)0.0308 (6)0.0046 (5)−0.0057 (4)0.0065 (5)
C70.0259 (6)0.0182 (6)0.0178 (5)0.0004 (4)−0.0019 (4)0.0000 (4)
C60.0357 (7)0.0332 (7)0.0241 (6)−0.0053 (6)−0.0035 (5)−0.0046 (5)
N10.0302 (6)0.0422 (7)0.0255 (6)−0.0032 (5)−0.0057 (4)0.0016 (5)
C30.0289 (6)0.0249 (6)0.0240 (6)0.0022 (5)−0.0009 (5)0.0023 (5)
C50.0308 (6)0.0231 (6)0.0230 (6)0.0007 (5)−0.0036 (4)−0.0006 (5)
Li10.0312 (11)0.0179 (10)0.0278 (11)−0.0006 (8)−0.0057 (8)−0.0018 (8)
O30.0282 (5)0.0601 (8)0.0336 (6)−0.0048 (5)−0.0066 (4)0.0073 (5)
O1—C71.2501 (15)C6—C51.3965 (18)
O1—Li1i1.946 (2)C6—H60.9300
O1—Li11.967 (2)C3—H30.9300
C4—C51.3697 (18)C5—H50.9300
C4—C31.3995 (17)Li1—O2iii1.909 (3)
C4—C71.5078 (17)Li1—O31.915 (3)
O2—C71.2398 (16)Li1—O1i1.946 (2)
O2—Li1ii1.909 (3)Li1—Li1i2.751 (4)
N2—C31.3272 (18)O3—H310.85 (3)
N2—N11.3460 (19)O3—H320.86 (3)
C6—N11.318 (2)
C7—O1—Li1i144.92 (11)C4—C3—H3118.2
C7—O1—Li1125.64 (11)C4—C5—C6117.21 (12)
Li1i—O1—Li189.33 (10)C4—C5—H5121.4
C5—C4—C3117.00 (11)C6—C5—H5121.4
C5—C4—C7122.76 (11)O2iii—Li1—O3113.75 (12)
C3—C4—C7120.23 (11)O2iii—Li1—O1i105.83 (12)
C7—O2—Li1ii146.29 (11)O3—Li1—O1i112.89 (12)
C3—N2—N1118.83 (12)O2iii—Li1—O1119.50 (12)
O2—C7—O1125.47 (12)O3—Li1—O1111.69 (13)
O2—C7—C4116.99 (11)O1i—Li1—O190.67 (10)
O1—C7—C4117.54 (11)O2iii—Li1—Li1i123.03 (16)
N1—C6—C5123.32 (13)O3—Li1—Li1i122.65 (15)
N1—C6—H6118.3O1i—Li1—Li1i45.65 (7)
C5—C6—H6118.3O1—Li1—Li1i45.02 (7)
C6—N1—N2119.95 (12)Li1—O3—H31133.5 (19)
N2—C3—C4123.52 (13)Li1—O3—H32118.7 (18)
N2—C3—H3118.2H31—O3—H32104 (3)
D—H···AD—HH···AD···AD—H···A
O3—H32···N1iv0.86 (3)1.93 (3)2.7910 (18)175 (3)
O3—H31···N2v0.85 (3)2.33 (3)3.1272 (19)155 (2)
Table 1

Selected bond lengths (Å)

O1—Li11.967 (2)
Li1—O2i1.909 (3)
Li1—O31.915 (3)
Li1—O1ii1.946 (2)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H32⋯N1iii0.86 (3)1.93 (3)2.7910 (18)175 (3)
O3—H31⋯N2iv0.85 (3)2.33 (3)3.1272 (19)155 (2)

Symmetry codes: (iii) ; (iv) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-Carboxy-pyridazin-1-ium chloride.

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-19

3.  Di-μ-aqua-bis-(μ-pyridazine-4-carboxyl-ato-κN:N')bis-[triaqua-(pyridazine-4-carboxyl-ato-κO,O')lead(II)] dihydrate.

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

4.  trans-Tetra-aqua-bis-(pyridazine-4-car-box-yl-ato-κO)magnesium(II) dihydrate.

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-09

5.  trans-Diaqua-(pyridazine-3-carboxyl-ato-κN,O)lithium.

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-15
  5 in total
  2 in total

1.  Poly[di-μ(2)-aqua-μ(2)-(5-methyl-pyrazine-2-carboxyl-ato)-(5-methyl-pyrazine-2-carboxyl-ato)-μ(3)-nitrato-trilithium].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-30

2.  Poly[μ(2)-aqua-μ(2)-(pyrazine-2-carboxyl-ato)-lithium].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16
  2 in total

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