Literature DB >> 22762282

Control of DNA capture by nanofluidic transistors.

Kee-Hyun Paik1, Yang Liu, Vincent Tabard-Cossa, Matthew J Waugh, David E Huber, J Provine, Roger T Howe, Robert W Dutton, Ronald W Davis.   

Abstract

We report the use of an array of electrically gated ~200 nm solid-state pores as nanofluidic transistors to manipulate the capture and passage of DNA. The devices are capable of reversibly altering the rate of DNA capture by over 3 orders of magnitude using sub-1 V biasing of a gate electrode. This efficient gating originates from the counter-balance of electrophoresis and electroosmosis, as revealed by quantitative numerical simulations. Such a reversible electronically tunable biomolecular switch may be used to manipulate nucleic acid delivery in a fluidic circuit, and its development is an important first step toward active control of DNA motion through solid-state nanopores for sensing applications.

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Year:  2012        PMID: 22762282      PMCID: PMC3429714          DOI: 10.1021/nn3014917

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  30 in total

1.  Electrokinetic trapping and concentration enrichment of DNA in a microfluidic channel.

Authors:  Jinhua Dai; Takashi Ito; Li Sun; Richard M Crooks
Journal:  J Am Chem Soc       Date:  2003-10-29       Impact factor: 15.419

Review 2.  Solid-state nanopores.

Authors:  Cees Dekker
Journal:  Nat Nanotechnol       Date:  2007-03-04       Impact factor: 39.213

3.  Single-molecule transport across an individual biomimetic nuclear pore complex.

Authors:  Stefan W Kowalczyk; Larisa Kapinos; Timothy R Blosser; Tomás Magalhães; Pauline van Nies; Roderick Y H Lim; Cees Dekker
Journal:  Nat Nanotechnol       Date:  2011-06-19       Impact factor: 39.213

4.  Electrokinetic concentration of DNA polymers in nanofluidic channels.

Authors:  Derek Stein; Zeno Deurvorst; Frank H J van der Heyden; Wiepke J A Koopmans; Alan Gabel; Cees Dekker
Journal:  Nano Lett       Date:  2010-03-10       Impact factor: 11.189

5.  Modeling the conductance and DNA blockade of solid-state nanopores.

Authors:  Stefan W Kowalczyk; Alexander Y Grosberg; Yitzhak Rabin; Cees Dekker
Journal:  Nanotechnology       Date:  2011-07-06       Impact factor: 3.874

Review 6.  End-labeled free-solution electrophoresis of DNA.

Authors:  Robert J Meagher; Jong-In Won; Laurette C McCormick; Sorin Nedelcu; Martin M Bertrand; Jordan L Bertram; Guy Drouin; Annelise E Barron; Gary W Slater
Journal:  Electrophoresis       Date:  2005-01       Impact factor: 3.535

7.  Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient.

Authors:  Meni Wanunu; Will Morrison; Yitzhak Rabin; Alexander Y Grosberg; Amit Meller
Journal:  Nat Nanotechnol       Date:  2009-12-20       Impact factor: 39.213

Review 8.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

Review 9.  Part I. Chromatography using ultra-stable metal oxide-based stationary phases for HPLC.

Authors:  J Nawrocki; C Dunlap; A McCormick; P W Carr
Journal:  J Chromatogr A       Date:  2004-02-27       Impact factor: 4.759

10.  Local electrical potential detection of DNA by nanowire-nanopore sensors.

Authors:  Ping Xie; Qihua Xiong; Ying Fang; Quan Qing; Charles M Lieber
Journal:  Nat Nanotechnol       Date:  2011-12-11       Impact factor: 39.213

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  12 in total

1.  Highly permeable silicon membranes for shear free chemotaxis and rapid cell labeling.

Authors:  Henry H Chung; Charles K Chan; Tejas S Khire; Graham A Marsh; Alfred Clark; Richard E Waugh; James L McGrath
Journal:  Lab Chip       Date:  2014-07-21       Impact factor: 6.799

2.  Solid-state nanopore localization by controlled breakdown of selectively thinned membranes.

Authors:  Autumn T Carlsen; Kyle Briggs; Adam R Hall; Vincent Tabard-Cossa
Journal:  Nanotechnology       Date:  2017-01-03       Impact factor: 3.874

Review 3.  Electrokinetic ion transport in nanofluidics and membranes with applications in bioanalysis and beyond.

Authors:  Li-Jing Cheng
Journal:  Biomicrofluidics       Date:  2018-04-12       Impact factor: 2.800

4.  Slowing DNA Transport Using Graphene-DNA Interactions.

Authors:  Shouvik Banerjee; James Wilson; Jiwook Shim; Manish Shankla; Elise A Corbin; Aleksei Aksimentiev; Rashid Bashir
Journal:  Adv Funct Mater       Date:  2015-02-11       Impact factor: 18.808

Review 5.  Conductivity-based detection techniques in nanofluidic devices.

Authors:  Zachary D Harms; Daniel G Haywood; Andrew R Kneller; Stephen C Jacobson
Journal:  Analyst       Date:  2015-05-19       Impact factor: 4.616

6.  Electrochemistry at the edge of a single graphene layer in a nanopore.

Authors:  Shouvik Banerjee; Jiwook Shim; Jose Rivera; Xiaozhong Jin; David Estrada; Vita Solovyeva; Xueqiu You; James Pak; Eric Pop; Narayana Aluru; Rashid Bashir
Journal:  ACS Nano       Date:  2012-12-28       Impact factor: 15.881

7.  Solid-State and Biological Nanopore for Real-Time Sensing of Single Chemical and Sequencing of DNA.

Authors:  Farzin Haque; Jinghong Li; Hai-Chen Wu; Xing-Jie Liang; Peixuan Guo
Journal:  Nano Today       Date:  2013-02       Impact factor: 20.722

8.  Water-Compression Gating of Nanopore Transport.

Authors:  James Wilson; Aleksei Aksimentiev
Journal:  Phys Rev Lett       Date:  2018-06-29       Impact factor: 9.161

9.  Role of Electroosmosis in the Permeation of Neutral Molecules: CymA and Cyclodextrin as an Example.

Authors:  Satya Prathyusha Bhamidimarri; Jigneshkumar Dahyabhai Prajapati; Bert van den Berg; Mathias Winterhalter; Ulrich Kleinekathöfer
Journal:  Biophys J       Date:  2016-02-02       Impact factor: 4.033

10.  Electron beam induced local crystallization of HfO2 nanopores for biosensing applications.

Authors:  Jiwook Shim; Jose A Rivera; Rashid Bashir
Journal:  Nanoscale       Date:  2013-08-15       Impact factor: 7.790

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