Literature DB >> 21685911

Single-molecule transport across an individual biomimetic nuclear pore complex.

Stefan W Kowalczyk1, Larisa Kapinos, Timothy R Blosser, Tomás Magalhães, Pauline van Nies, Roderick Y H Lim, Cees Dekker.   

Abstract

Nuclear pore complexes regulate the selective exchange of RNA and proteins across the nuclear envelope in eukaryotic cells. Biomimetic strategies offer new opportunities to investigate this remarkable transport phenomenon. Here, we show selective transport of proteins across individual biomimetic nuclear pore complexes at the single-molecule level. Each biomimetic complex is constructed by covalently tethering either Nup98 or Nup153 (phenylalanine-glycine (FG) nucleoporins) to a solid-state nanopore. Individual translocation events are monitored using ionic current measurements with sub-millisecond temporal resolution. Transport receptors (Impβ) proceed with a dwell time of ∼2.5 ms for both Nup98- and Nup153-coated pores, whereas the passage of non-specific proteins is strongly inhibited with different degrees of selectivity. For pores up to ∼25 nm in diameter, Nups form a dense and low-conducting barrier, whereas they adopt a more open structure in larger pores. Our biomimetic nuclear pore complex provides a quantitative platform for studying nucleocytoplasmic transport phenomena at the single-molecule level in vitro.

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Year:  2011        PMID: 21685911     DOI: 10.1038/nnano.2011.88

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  39 in total

1.  Nuclear hourglass technique: an approach that detects electrically open nuclear pores in Xenopus laevis oocyte.

Authors:  T Danker; H Schillers; J Storck; V Shahin; B Krämer; M Wilhelmi; H Oberleithner
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-09       Impact factor: 11.205

Review 2.  Virtual gating and nuclear transport: the hole picture.

Authors:  Michael P Rout; John D Aitchison; Marcelo O Magnasco; Brian T Chait
Journal:  Trends Cell Biol       Date:  2003-12       Impact factor: 20.808

3.  Imaging of single-molecule translocation through nuclear pore complexes.

Authors:  Weidong Yang; Jeff Gelles; Siegfried M Musser
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-11       Impact factor: 11.205

4.  Translocation of double-strand DNA through a silicon oxide nanopore.

Authors:  A J Storm; J H Chen; H W Zandbergen; C Dekker
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-05-06

5.  Noise in solid-state nanopores.

Authors:  R M M Smeets; U F Keyser; N H Dekker; C Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-09       Impact factor: 11.205

6.  Synthetic mimic of selective transport through the nuclear pore complex.

Authors:  Yaron Caspi; David Zbaida; Hagai Cohen; Michael Elbaum
Journal:  Nano Lett       Date:  2008-10-25       Impact factor: 11.189

7.  Biophysical coarse-grained modeling provides insights into transport through the nuclear pore complex.

Authors:  R Moussavi-Baygi; Y Jamali; R Karimi; M R K Mofrad
Journal:  Biophys J       Date:  2011-03-16       Impact factor: 4.033

8.  Autonomy and robustness of translocation through the nuclear pore complex: a single-molecule study.

Authors:  Thomas Dange; David Grünwald; Antje Grünwald; Reiner Peters; Ulrich Kubitscheck
Journal:  J Cell Biol       Date:  2008-09-29       Impact factor: 10.539

9.  Selectivity mechanism of the nuclear pore complex characterized by single cargo tracking.

Authors:  Alan R Lowe; Jake J Siegel; Petr Kalab; Merek Siu; Karsten Weis; Jan T Liphardt
Journal:  Nature       Date:  2010-09-01       Impact factor: 49.962

10.  Artificial nanopores that mimic the transport selectivity of the nuclear pore complex.

Authors:  Tijana Jovanovic-Talisman; Jaclyn Tetenbaum-Novatt; Anna Sophia McKenney; Anton Zilman; Reiner Peters; Michael P Rout; Brian T Chait
Journal:  Nature       Date:  2008-12-21       Impact factor: 49.962

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  73 in total

1.  Nucleocytoplasmic transport: a role for nonspecific competition in karyopherin-nucleoporin interactions.

Authors:  Jaclyn Tetenbaum-Novatt; Loren E Hough; Roxana Mironska; Anna Sophia McKenney; Michael P Rout
Journal:  Mol Cell Proteomics       Date:  2012-02-22       Impact factor: 5.911

2.  Stochastic sensing of proteins with receptor-modified solid-state nanopores.

Authors:  Ruoshan Wei; Volker Gatterdam; Ralph Wieneke; Robert Tampé; Ulrich Rant
Journal:  Nat Nanotechnol       Date:  2012-03-11       Impact factor: 39.213

Review 3.  How to operate a nuclear pore complex by Kap-centric control.

Authors:  Roderick Y H Lim; Binlu Huang; Larisa E Kapinos
Journal:  Nucleus       Date:  2015       Impact factor: 4.197

4.  Resistive-pulse measurements with nanopipettes: detection of Au nanoparticles and nanoparticle-bound anti-peanut IgY.

Authors:  Yixian Wang; Kaan Kececi; Michael V Mirkin; Vigneshwaran Mani; Naimish Sardesai; James F Rusling
Journal:  Chem Sci       Date:  2013-02-01       Impact factor: 9.825

Review 5.  Dynamics and diverse functions of nuclear pore complex proteins.

Authors:  Guillaume Chatel; Birthe Fahrenkrog
Journal:  Nucleus       Date:  2012-03-01       Impact factor: 4.197

6.  NPC mimics: probing the mechanism of nucleocytoplasmic transport.

Authors:  Tijana Jovanovic-Talisman; Brian T Chait; Michael P Rout
Journal:  Methods Cell Biol       Date:  2014       Impact factor: 1.441

7.  Nanobiotechnology: building a basic nanomachine.

Authors:  Tijana Jovanovic-Talisman; Anton Zilman
Journal:  Nat Nanotechnol       Date:  2011-07-06       Impact factor: 39.213

Review 8.  Nanopore sensors for nucleic acid analysis.

Authors:  Bala Murali Venkatesan; Rashid Bashir
Journal:  Nat Nanotechnol       Date:  2011-09-18       Impact factor: 39.213

9.  Nanoscale mechanism of molecular transport through the nuclear pore complex as studied by scanning electrochemical microscopy.

Authors:  Jiyeon Kim; Anahita Izadyar; Nikoloz Nioradze; Shigeru Amemiya
Journal:  J Am Chem Soc       Date:  2013-01-30       Impact factor: 15.419

10.  An engineered ClyA nanopore detects folded target proteins by selective external association and pore entry.

Authors:  Misha Soskine; Annemie Biesemans; Benjamien Moeyaert; Stephen Cheley; Hagan Bayley; Giovanni Maglia
Journal:  Nano Lett       Date:  2012-08-06       Impact factor: 11.189

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