Literature DB >> 30004740

Water-Compression Gating of Nanopore Transport.

James Wilson1, Aleksei Aksimentiev2.   

Abstract

Electric field-driven motion of biomolecules is a process essential to many analytics methods, in particular, to nanopore sensing, where a transient reduction of nanopore ionic current indicates the passage of a biomolecule through the nanopore. However, before any molecule can be examined by a nanopore, the molecule must first enter the nanopore from the solution. Previously, the rate of capture by a nanopore was found to increase with the strength of the applied electric field. Here, we theoretically show that, in the case of narrow pores in graphene membranes, increasing the strength of the electric field can not only decrease the rate of capture, but also repel biomolecules from the nanopore. As the strong electric field polarizes water near and within the nanopore, the high gradient of the field also produces a strong dielectrophoretic force that compresses the water. The pressure difference caused by the sharp water density gradient produces a hydrostatic force that repels DNA or proteins from the nanopore, preventing, in certain conditions, their capture. We show that such local compression of fluid can regulate the transport of biomolecules through nanoscale passages in the absence of physical gates and sort proteins according to their phosphorylated states.

Entities:  

Year:  2018        PMID: 30004740      PMCID: PMC6262874          DOI: 10.1103/PhysRevLett.120.268101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  41 in total

1.  Imaging alpha-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map.

Authors:  Aleksij Aksimentiev; Klaus Schulten
Journal:  Biophys J       Date:  2005-03-11       Impact factor: 4.033

2.  Effect of salt concentration on the electrophoretic speed of a polyelectrolyte through a nanopore.

Authors:  Sandip Ghosal
Journal:  Phys Rev Lett       Date:  2007-06-07       Impact factor: 9.161

3.  3D pressure field in lipid membranes and membrane-protein complexes.

Authors:  O H Samuli Ollila; H Jelger Risselada; Martti Louhivuori; Erik Lindahl; Ilpo Vattulainen; Siewert J Marrink
Journal:  Phys Rev Lett       Date:  2009-02-19       Impact factor: 9.161

4.  The membrane potential and its representation by a constant electric field in computer simulations.

Authors:  Benoît Roux
Journal:  Biophys J       Date:  2008-07-18       Impact factor: 4.033

5.  Permeation through nanochannels: revealing fast kinetics.

Authors:  Kozhinjampara R Mahendran; Pratik Raj Singh; Jürgen Arning; Stefan Stolte; Ulrich Kleinekathöfer; Mathias Winterhalter
Journal:  J Phys Condens Matter       Date:  2010-10-29       Impact factor: 2.333

6.  Pressure enhancement in carbon nanopores: a major confinement effect.

Authors:  Yun Long; Jeremy C Palmer; Benoit Coasne; Małgorzata Śliwinska-Bartkowiak; Keith E Gubbins
Journal:  Phys Chem Chem Phys       Date:  2011-08-30       Impact factor: 3.676

7.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

8.  Smooth DNA transport through a narrowed pore geometry.

Authors:  Spencer Carson; James Wilson; Aleksei Aksimentiev; Meni Wanunu
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

9.  Atomistic Hydrodynamics and the Dynamical Hydrophobic Effect in Porous Graphene.

Authors:  Steven E Strong; Joel D Eaves
Journal:  J Phys Chem Lett       Date:  2016-05-10       Impact factor: 6.475

10.  3D-DART: a DNA structure modelling server.

Authors:  Marc van Dijk; Alexandre M J J Bonvin
Journal:  Nucleic Acids Res       Date:  2009-05-05       Impact factor: 16.971

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  7 in total

1.  Electro-Mechanical Conductance Modulation of a Nanopore Using a Removable Gate.

Authors:  Shidi Zhao; Laura Restrepo-Pérez; Misha Soskine; Giovanni Maglia; Chirlmin Joo; Cees Dekker; Aleksei Aksimentiev
Journal:  ACS Nano       Date:  2019-02-08       Impact factor: 15.881

2.  Colloquium: Ionic phenomena in nanoscale pores through 2D materials.

Authors:  Subin Sahu; Michael Zwolak
Journal:  Rev Mod Phys       Date:  2019       Impact factor: 54.494

3.  How capture affects polymer translocation in a solitary nanopore.

Authors:  Swarnadeep Seth; Aniket Bhattacharya
Journal:  J Chem Phys       Date:  2022-06-28       Impact factor: 4.304

4.  An analog of Friedel oscillations in nanoconfined water.

Authors:  Minmin Xue; Zhili Hu; Hu Qiu; Chun Shen; Wanlin Guo; Zhuhua Zhang
Journal:  Natl Sci Rev       Date:  2021-11-29       Impact factor: 23.178

5.  Geometrically Induced Selectivity and Unidirectional Electroosmosis in Uncharged Nanopores.

Authors:  Giovanni Di Muccio; Blasco Morozzo Della Rocca; Mauro Chinappi
Journal:  ACS Nano       Date:  2022-05-19       Impact factor: 18.027

6.  Ions and Water Dancing through Atom-Scale Holes: A Perspective toward "Size Zero".

Authors:  Jothi Priyanka Thiruraman; Paul Masih Das; Marija Drndić
Journal:  ACS Nano       Date:  2020-03-20       Impact factor: 18.027

7.  Overlimiting current near a nanochannel a new insight using molecular dynamics simulations.

Authors:  D Manikandan; Vishal V R Nandigana
Journal:  Sci Rep       Date:  2021-07-26       Impact factor: 4.379

  7 in total

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