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Literature DB >> 22743770

Current challenges in open-source bioimage informatics.

Abstract

We discuss the advantages and challenges of the open-source strategy in biological image analysis and argue that its full impact will not be realized without better support and recognition of software engineers' contributions to the biological sciences and more support of this development model from funders and institutions.

Mesh：

Year: 2012 PMID： 22743770 DOI： 10.1038/nmeth.2082

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

14 in total

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3. Research priorities. Shining light into black boxes.

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4. The case for open computer programs.

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5. BioImageXD: an open, general-purpose and high-throughput image-processing platform.

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10. CellProfiler: image analysis software for identifying and quantifying cell phenotypes.

Authors: Anne E Carpenter; Thouis R Jones; Michael R Lamprecht; Colin Clarke; In Han Kang; Ola Friman; David A Guertin; Joo Han Chang; Robert A Lindquist; Jason Moffat; Polina Golland; David M Sabatini
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Review 4. Harnessing non-destructive 3D pathology.

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5. Low-cost motility tracking system (LOCOMOTIS) for time-lapse microscopy applications and cell visualisation.

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6. Anima: modular workflow system for comprehensive image data analysis.

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7. Label-free segmentation of Co-cultured cells on a nanotopographical gradient.

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8. Light microscopy applications in systems biology: opportunities and challenges.

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9. Automated annotation of developmental stages of Drosophila embryos in images containing spatial patterns of expression.

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10. SOAX: a software for quantification of 3D biopolymer networks.

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