Literature DB >> 22499926

Research priorities. Shining light into black boxes.

A Morin1, J Urban, P D Adams, I Foster, A Sali, D Baker, P Sliz.   

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Year:  2012        PMID： 22499926      PMCID： PMC4203337          DOI： 10.1126/science.1218263

Source DB:  PubMed          Journal:  Science        ISSN： 0036-8075            Impact factor:   47.728


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  14 in total

1.  Sharing publication-related data and materials: responsibilities of authorship in the life sciences.

Authors:  Thomas R Cech; Sean R Eddy; David Eisenberg; Karen Hersey; Steven H Holtzman; George H Poste; Natasha V Raikhel; Richard H Scheller; David B Singer; Mary C Waltham
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2.  Announcing the worldwide Protein Data Bank.

Authors:  Helen Berman; Kim Henrick; Haruki Nakamura
Journal:  Nat Struct Biol       Date:  2003-12

3.  Lessons from Bayh-Dole.

Authors:  Bhaven N Sampat
Journal:  Nature       Date:  2010-12-09       Impact factor: 49.962

4.  Publish your computer code: it is good enough.

Authors:  Nick Barnes
Journal:  Nature       Date:  2010-10-14       Impact factor: 49.962

5.  Computational science: ...Error.

Authors:  Zeeya Merali
Journal:  Nature       Date:  2010-10-14       Impact factor: 49.962

6.  Bermuda Principles meet structural biology.

Authors:  Aled Edwards
Journal:  Nat Struct Mol Biol       Date:  2008-02       Impact factor: 15.369

7.  Computer science. Accessible reproducible research.

Authors:  Jill P Mesirov
Journal:  Science       Date:  2010-01-22       Impact factor: 47.728

8.  Prepublication data sharing.

Authors:  Ewan Birney; Thomas J Hudson; Eric D Green; Chris Gunter; Sean Eddy; Jane Rogers; Jennifer R Harris; S Dusko Ehrlich; Rolf Apweiler; Christopher P Austin; Lisa Berglund; Martin Bobrow; Chas Bountra; Anthony J Brookes; Anne Cambon-Thomsen; Nigel P Carter; Rex L Chisholm; Jorge L Contreras; Robert M Cooke; William L Crosby; Ken Dewar; Richard Durbin; Stephanie O M Dyke; Joseph R Ecker; Khaled El Emam; Lars Feuk; Stacey B Gabriel; John Gallacher; William M Gelbart; Antoni Granell; Francisco Guarner; Tim Hubbard; Scott A Jackson; Jennifer L Jennings; Yann Joly; Steven M Jones; Jane Kaye; Karen L Kennedy; Bartha Maria Knoppers; Nikos C Kyrpides; William W Lowrance; Jingchu Luo; John J MacKay; Luis Martín-Rivera; W Richard McCombie; John D McPherson; Linda Miller; Webb Miller; Don Moerman; Vincent Mooser; Cynthia C Morton; James M Ostell; B F Francis Ouellette; Julian Parkhill; Parminder S Raina; Christopher Rawlings; Steven E Scherer; Stephen W Scherer; Paul N Schofield; Christoph W Sensen; Victoria C Stodden; Michael R Sussman; Toshihiro Tanaka; Janet Thornton; Tatsuhiko Tsunoda; David Valle; Eero I Vuorio; Neil M Walker; Susan Wallace; George Weinstock; William B Whitman; Kim C Worley; Cathy Wu; Jiayan Wu; Jun Yu
Journal:  Nature       Date:  2009-09-10       Impact factor: 49.962

9.  Scientific software development is not an oxymoron.

Authors:  Susan M Baxter; Steven W Day; Jacquelyn S Fetrow; Stephanie J Reisinger
Journal:  PLoS Comput Biol       Date:  2006-09-08       Impact factor: 4.475

10.  Sharing detailed research data is associated with increased citation rate.

Authors:  Heather A Piwowar; Roger S Day; Douglas B Fridsma
Journal:  PLoS One       Date:  2007-03-21       Impact factor: 3.240
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  34 in total

1.  Current challenges in open-source bioimage informatics.

Authors:  Albert Cardona; Pavel Tomancak
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

2.  FAST: FAST Analysis of Sequences Toolbox.

Authors:  Travis J Lawrence; Kyle T Kauffman; Katherine C H Amrine; Dana L Carper; Raymond S Lee; Peter J Becich; Claudia J Canales; David H Ardell
Journal:  Front Genet       Date:  2015-05-19       Impact factor: 4.599

3.  Toward standard practices for sharing computer code and programs in neuroscience.

Authors:  Stephen J Eglen; Ben Marwick; Yaroslav O Halchenko; Michael Hanke; Shoaib Sufi; Padraig Gleeson; R Angus Silver; Andrew P Davison; Linda Lanyon; Mathew Abrams; Thomas Wachtler; David J Willshaw; Christophe Pouzat; Jean-Baptiste Poline
Journal:  Nat Neurosci       Date:  2017-05-25       Impact factor: 24.884

4.  Computing: A vision for data science.

Authors:  Chris A Mattmann
Journal:  Nature       Date:  2013-01-24       Impact factor: 49.962

5.  An Introduction to Programming for Bioscientists: A Python-Based Primer.

Authors:  Berk Ekmekci; Charles E McAnany; Cameron Mura
Journal:  PLoS Comput Biol       Date:  2016-06-07       Impact factor: 4.475

Review 6.  Can You Repeat That? Exploring the Definition of a Successful Model Replication in Health Economics.

Authors:  Emma McManus; David Turner; Tracey Sach
Journal:  Pharmacoeconomics       Date:  2019-11       Impact factor: 4.981

7.  Latent classiness and other mixtures.

Authors:  Michael C Neale
Journal:  Behav Genet       Date:  2014-01-30       Impact factor: 2.805

8.  Open is Not Enough. Let's Take the Next Step: An Integrated, Community-Driven Computing Platform for Neuroscience.

Authors:  Yaroslav O Halchenko; Michael Hanke
Journal:  Front Neuroinform       Date:  2012-06-29       Impact factor: 4.081

9.  Better living through transparency: improving the reproducibility of fMRI results through comprehensive methods reporting.

Authors:  Joshua Carp
Journal:  Cogn Affect Behav Neurosci       Date:  2013-09       Impact factor: 3.526

10.  A quick guide to software licensing for the scientist-programmer.

Authors:  Andrew Morin; Jennifer Urban; Piotr Sliz
Journal:  PLoS Comput Biol       Date:  2012-07-26       Impact factor: 4.475
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