Literature DB >> 27926723

Imagining the future of bioimage analysis.

Erik Meijering1, Anne E Carpenter2, Hanchuan Peng3, Fred A Hamprecht4, Jean-Christophe Olivo-Marin5.   

Abstract

Mesh：

Year:  2016        PMID： 27926723     DOI： 10.1038/nbt.3722

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  38 in total

Review 1.  How big is human memory, or on being just useful enough.

Authors:  Y Dudai
Journal:  Learn Mem       Date:  1997 Jan-Feb       Impact factor: 2.460

Review 2.  Toward the virtual cell: automated approaches to building models of subcellular organization "learned" from microscopy images.

Authors:  Taráz E Buck; Jieyue Li; Gustavo K Rohde; Robert F Murphy
Journal:  Bioessays       Date:  2012-07-10       Impact factor: 4.345

3.  A call for bioimaging software usability.

Authors:  Anne E Carpenter; Lee Kamentsky; Kevin W Eliceiri
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

4.  Comparison of quantitative methods for cell-shape analysis.

Authors:  Z Pincus; J A Theriot
Journal:  J Microsc       Date:  2007-08       Impact factor: 1.758

5.  Quantitative imaging of focal adhesion dynamics and their regulation by HGF and Rap1 signaling.

Authors:  Emma Spanjaard; Ihor Smal; Nicos Angelopoulos; Ingrid Verlaan; Alexandre Matov; Erik Meijering; Lodewyk Wessels; Hans Bos; Johan de Rooij
Journal:  Exp Cell Res       Date:  2014-10-31       Impact factor: 3.905

6.  Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes.

Authors:  Beate Neumann; Thomas Walter; Jean-Karim Hériché; Jutta Bulkescher; Holger Erfle; Christian Conrad; Phill Rogers; Ina Poser; Michael Held; Urban Liebel; Cihan Cetin; Frank Sieckmann; Gregoire Pau; Rolf Kabbe; Annelie Wünsche; Venkata Satagopam; Michael H A Schmitz; Catherine Chapuis; Daniel W Gerlich; Reinhard Schneider; Roland Eils; Wolfgang Huber; Jan-Michael Peters; Anthony A Hyman; Richard Durbin; Rainer Pepperkok; Jan Ellenberg
Journal:  Nature       Date:  2010-04-01       Impact factor: 49.962

7.  BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images.

Authors:  Hanchuan Peng; Michael Hawrylycz; Jane Roskams; Sean Hill; Nelson Spruston; Erik Meijering; Giorgio A Ascoli
Journal:  Neuron       Date:  2015-07-15       Impact factor: 17.173

8.  Assessment of algorithms for mitosis detection in breast cancer histopathology images.

Authors:  Mitko Veta; Paul J van Diest; Stefan M Willems; Haibo Wang; Anant Madabhushi; Angel Cruz-Roa; Fabio Gonzalez; Anders B L Larsen; Jacob S Vestergaard; Anders B Dahl; Dan C Cireşan; Jürgen Schmidhuber; Alessandro Giusti; Luca M Gambardella; F Boray Tek; Thomas Walter; Ching-Wei Wang; Satoshi Kondo; Bogdan J Matuszewski; Frederic Precioso; Violet Snell; Josef Kittler; Teofilo E de Campos; Adnan M Khan; Nasir M Rajpoot; Evdokia Arkoumani; Miangela M Lacle; Max A Viergever; Josien P W Pluim
Journal:  Med Image Anal       Date:  2014-11-29       Impact factor: 8.545

9.  Mitosis detection in breast cancer histological images An ICPR 2012 contest.

Authors:  Ludovic Roux; Daniel Racoceanu; Nicolas Loménie; Maria Kulikova; Humayun Irshad; Jacques Klossa; Frédérique Capron; Catherine Genestie; Gilles Le Naour; Metin N Gurcan
Journal:  J Pathol Inform       Date:  2013-05-30

10.  Objective comparison of particle tracking methods.

Authors:  Nicolas Chenouard; Ihor Smal; Fabrice de Chaumont; Martin Maška; Ivo F Sbalzarini; Yuanhao Gong; Janick Cardinale; Craig Carthel; Stefano Coraluppi; Mark Winter; Andrew R Cohen; William J Godinez; Karl Rohr; Yannis Kalaidzidis; Liang Liang; James Duncan; Hongying Shen; Yingke Xu; Klas E G Magnusson; Joakim Jaldén; Helen M Blau; Perrine Paul-Gilloteaux; Philippe Roudot; Charles Kervrann; François Waharte; Jean-Yves Tinevez; Spencer L Shorte; Joost Willemse; Katherine Celler; Gilles P van Wezel; Han-Wei Dan; Yuh-Show Tsai; Carlos Ortiz de Solórzano; Jean-Christophe Olivo-Marin; Erik Meijering
Journal:  Nat Methods       Date:  2014-01-19       Impact factor: 28.547
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  47 in total

1.  Whole-Neuron Synaptic Mapping Reveals Spatially Precise Excitatory/Inhibitory Balance Limiting Dendritic and Somatic Spiking.

Authors:  Daniel Maxim Iascone; Yujie Li; Uygar Sümbül; Michael Doron; Hanbo Chen; Valentine Andreu; Finola Goudy; Heike Blockus; Larry F Abbott; Idan Segev; Hanchuan Peng; Franck Polleux
Journal:  Neuron       Date:  2020-03-12       Impact factor: 17.173

2.  Automated Neuron Detection in High-Content Fluorescence Microscopy Images Using Machine Learning.

Authors:  Gadea Mata; Miroslav Radojević; Carlos Fernandez-Lozano; Ihor Smal; Niels Werij; Miguel Morales; Erik Meijering; Julio Rubio
Journal:  Neuroinformatics       Date:  2019-04

3.  Frontiers in Intravital Multiphoton Microscopy of Cancer.

Authors:  Louisiane Perrin; Battuya Bayarmagnai; Bojana Gligorijevic
Journal:  Cancer Rep (Hoboken)       Date:  2019-06-20

4.  Whole-Brain Image Analysis and Anatomical Atlas 3D Generation Using MagellanMapper.

Authors:  David M Young; Clif Duhn; Michael Gilson; Mai Nojima; Deniz Yuruk; Aparna Kumar; Weimiao Yu; Stephan J Sanders
Journal:  Curr Protoc Neurosci       Date:  2020-12

5.  A robust unsupervised machine-learning method to quantify the morphological heterogeneity of cells and nuclei.

Authors:  Jude M Phillip; Kyu-Sang Han; Wei-Chiang Chen; Denis Wirtz; Pei-Hsun Wu
Journal:  Nat Protoc       Date:  2021-01-11       Impact factor: 13.491

6.  Learning Generative Models of Tissue Organization with Supervised GANs.

Authors:  Ligong Han; Robert F Murphy; Deva Ramanan
Journal:  IEEE Winter Conf Appl Comput Vis       Date:  2018-05-07

7.  Constructing and optimizing 3D atlases from 2D data with application to the developing mouse brain.

Authors:  David M Young; Siavash Fazel Darbandi; Grace Schwartz; Zachary Bonzell; Deniz Yuruk; Mai Nojima; Laurent C Gole; John Lr Rubenstein; Weimiao Yu; Stephan J Sanders
Journal:  Elife       Date:  2021-02-11       Impact factor: 8.140

8.  Probabilistic spatial analysis in quantitative microscopy with uncertainty-aware cell detection using deep Bayesian regression.

Authors:  Alvaro Gomariz; Tiziano Portenier; César Nombela-Arrieta; Orcun Goksel
Journal:  Sci Adv       Date:  2022-02-04       Impact factor: 14.136

9.  On the objectivity, reliability, and validity of deep learning enabled bioimage analyses.

Authors:  Dennis Segebarth; Matthias Griebel; Christoph M Flath; Robert Blum; Nikolai Stein; Cora R von Collenberg; Corinna Martin; Dominik Fiedler; Lucas B Comeras; Anupam Sah; Victoria Schoeffler; Teresa Lüffe; Alexander Dürr; Rohini Gupta; Manju Sasi; Christina Lillesaar; Maren D Lange; Ramon O Tasan; Nicolas Singewald; Hans-Christian Pape
Journal:  Elife       Date:  2020-10-19       Impact factor: 8.140

Review 10.  Data science in cell imaging.

Authors:  Meghan K Driscoll; Assaf Zaritsky
Journal:  J Cell Sci       Date:  2021-04-01       Impact factor: 5.285
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