Literature DB >> 22688513

Saccharomyces cerevisiae ribosomal protein L26 is not essential for ribosome assembly and function.

Reyes Babiano1, Michael Gamalinda, John L Woolford, Jesús de la Cruz.   

Abstract

Ribosomal proteins play important roles in ribosome biogenesis and function. Here, we study the evolutionarily conserved L26 in Saccharomyces cerevisiae, which assembles into pre-60S ribosomal particles in the nucle(ol)us. Yeast L26 is one of the many ribosomal proteins encoded by two functional genes. We have disrupted both genes; surprisingly, the growth of the resulting rpl26 null mutant is apparently identical to that of the isogenic wild-type strain. The absence of L26 minimally alters 60S ribosomal subunit biogenesis. Polysome analysis revealed the appearance of half-mers. Analysis of pre-rRNA processing indicated that L26 is mainly required to optimize 27S pre-rRNA maturation, without which the release of pre-60S particles from the nucle(ol)us is partially impaired. Ribosomes lacking L26 exhibit differential reactivity to dimethylsulfate in domain I of 25S/5.8S rRNAs but apparently are able to support translation in vivo with wild-type accuracy. The bacterial homologue of yeast L26, L24, is a primary rRNA binding protein required for 50S ribosomal subunit assembly in vitro and in vivo. Our results underscore potential differences between prokaryotic and eukaryotic ribosome assembly. We discuss the reasons why yeast L26 plays such an apparently nonessential role in the cell.

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Year:  2012        PMID: 22688513      PMCID: PMC3434550          DOI: 10.1128/MCB.00539-12

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  114 in total

1.  60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm.

Authors:  Tracy A Nissan; Jochen Bassler; Elisabeth Petfalski; David Tollervey; Ed Hurt
Journal:  EMBO J       Date:  2002-10-15       Impact factor: 11.598

2.  Sequential protein association with nascent 60S ribosomal particles.

Authors:  Cosmin Saveanu; Abdelkader Namane; Pierre-Emmanuel Gleizes; Alice Lebreton; Jean-Claude Rousselle; Jacqueline Noaillac-Depeyre; Nicole Gas; Alain Jacquier; Micheline Fromont-Racine
Journal:  Mol Cell Biol       Date:  2003-07       Impact factor: 4.272

3.  Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale.

Authors:  Odile Lecompte; Raymond Ripp; Jean-Claude Thierry; Dino Moras; Olivier Poch
Journal:  Nucleic Acids Res       Date:  2002-12-15       Impact factor: 16.971

4.  90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors.

Authors:  Paola Grandi; Vladimir Rybin; Jochen Bassler; Elisabeth Petfalski; Daniela Strauss; Martina Marzioch; Thorsten Schäfer; Bernhard Kuster; Herbert Tschochner; David Tollervey; Anne Claude Gavin; Ed Hurt
Journal:  Mol Cell       Date:  2002-07       Impact factor: 17.970

5.  Saccharomyces cerevisiae nucleolar protein Nop7p is necessary for biogenesis of 60S ribosomal subunits.

Authors:  Cynthia C Adams; Jelena Jakovljevic; Judibelle Roman; Piyanun Harnpicharnchai; John L Woolford
Journal:  RNA       Date:  2002-02       Impact factor: 4.942

6.  The path from nucleolar 90S to cytoplasmic 40S pre-ribosomes.

Authors:  Thorsten Schäfer; Daniela Strauss; Elisabeth Petfalski; David Tollervey; Ed Hurt
Journal:  EMBO J       Date:  2003-03-17       Impact factor: 11.598

7.  RPL29 codes for a non-essential protein of the 60S ribosomal subunit in Saccharomyces cerevisiae and exhibits synthetic lethality with mutations in genes for proteins required for subunit coupling.

Authors:  Marie Laure DeLabre; Jacques Kessl; Spyridoula Karamanou; Bernard L Trumpower
Journal:  Biochim Biophys Acta       Date:  2002-04-12

8.  All three functional domains of the large ribosomal subunit protein L25 are required for both early and late pre-rRNA processing steps in Saccharomyces cerevisiae.

Authors:  C A van Beekvelt; M de Graaff-Vincent; A W Faber; J van't Riet; J Venema; H A Raué
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

9.  Functional profiling of the Saccharomyces cerevisiae genome.

Authors:  Guri Giaever; Angela M Chu; Li Ni; Carla Connelly; Linda Riles; Steeve Véronneau; Sally Dow; Ankuta Lucau-Danila; Keith Anderson; Bruno André; Adam P Arkin; Anna Astromoff; Mohamed El-Bakkoury; Rhonda Bangham; Rocio Benito; Sophie Brachat; Stefano Campanaro; Matt Curtiss; Karen Davis; Adam Deutschbauer; Karl-Dieter Entian; Patrick Flaherty; Francoise Foury; David J Garfinkel; Mark Gerstein; Deanna Gotte; Ulrich Güldener; Johannes H Hegemann; Svenja Hempel; Zelek Herman; Daniel F Jaramillo; Diane E Kelly; Steven L Kelly; Peter Kötter; Darlene LaBonte; David C Lamb; Ning Lan; Hong Liang; Hong Liao; Lucy Liu; Chuanyun Luo; Marc Lussier; Rong Mao; Patrice Menard; Siew Loon Ooi; Jose L Revuelta; Christopher J Roberts; Matthias Rose; Petra Ross-Macdonald; Bart Scherens; Greg Schimmack; Brenda Shafer; Daniel D Shoemaker; Sharon Sookhai-Mahadeo; Reginald K Storms; Jeffrey N Strathern; Giorgio Valle; Marleen Voet; Guido Volckaert; Ching-yun Wang; Teresa R Ward; Julie Wilhelmy; Elizabeth A Winzeler; Yonghong Yang; Grace Yen; Elaine Youngman; Kexin Yu; Howard Bussey; Jef D Boeke; Michael Snyder; Peter Philippsen; Ronald W Davis; Mark Johnston
Journal:  Nature       Date:  2002-07-25       Impact factor: 49.962

10.  A Noc complex specifically involved in the formation and nuclear export of ribosomal 40 S subunits.

Authors:  Philipp Milkereit; Daniela Strauss; Jochen Bassler; Olivier Gadal; Holger Kühn; Sylvia Schütz; Nicole Gas; Johannes Lechner; Ed Hurt; Herbert Tschochner
Journal:  J Biol Chem       Date:  2002-11-20       Impact factor: 5.157

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  35 in total

1.  Ribosomal protein RPL26 is the principal target of UFMylation.

Authors:  Christopher P Walczak; Dara E Leto; Lichao Zhang; Celeste Riepe; Ryan Y Muller; Paul A DaRosa; Nicholas T Ingolia; Joshua E Elias; Ron R Kopito
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-09       Impact factor: 11.205

2.  Cryo-EM structures of Arx1 and maturation factors Rei1 and Jjj1 bound to the 60S ribosomal subunit.

Authors:  Basil J Greber; Daniel Boehringer; Christian Montellese; Nenad Ban
Journal:  Nat Struct Mol Biol       Date:  2012-11-11       Impact factor: 15.369

3.  Ribosome assembly factors Pwp1 and Nop12 are important for folding of 5.8S rRNA during ribosome biogenesis in Saccharomyces cerevisiae.

Authors:  Jason Talkish; Ian Winsten Campbell; Aarti Sahasranaman; Jelena Jakovljevic; John L Woolford
Journal:  Mol Cell Biol       Date:  2014-03-17       Impact factor: 4.272

Review 4.  Principles of 60S ribosomal subunit assembly emerging from recent studies in yeast.

Authors:  Salini Konikkat; John L Woolford
Journal:  Biochem J       Date:  2017-01-15       Impact factor: 3.857

5.  Yeast ribosomal protein L40 assembles late into precursor 60 S ribosomes and is required for their cytoplasmic maturation.

Authors:  Antonio Fernández-Pevida; Olga Rodríguez-Galán; Antonio Díaz-Quintana; Dieter Kressler; Jesús de la Cruz
Journal:  J Biol Chem       Date:  2012-09-20       Impact factor: 5.157

Review 6.  Functions of ribosomal proteins in assembly of eukaryotic ribosomes in vivo.

Authors:  Jesus de la Cruz; Katrin Karbstein; John L Woolford
Journal:  Annu Rev Biochem       Date:  2015-02-20       Impact factor: 23.643

7.  Growth inhibitory effects of large subunit ribosomal proteins in melanoma.

Authors:  Gregory R Kardos; Mu-Shui Dai; Gavin P Robertson
Journal:  Pigment Cell Melanoma Res       Date:  2014-06-16       Impact factor: 4.693

Review 8.  Ribosome biogenesis in the yeast Saccharomyces cerevisiae.

Authors:  John L Woolford; Susan J Baserga
Journal:  Genetics       Date:  2013-11       Impact factor: 4.562

9.  The Functional Role of eL19 and eB12 Intersubunit Bridge in the Eukaryotic Ribosome.

Authors:  Ivan Kisly; Suna P Gulay; Uno Mäeorg; Jonathan D Dinman; Jaanus Remme; Tiina Tamm
Journal:  J Mol Biol       Date:  2016-03-30       Impact factor: 5.469

10.  The modest beginnings of one genome project.

Authors:  David B Kaback
Journal:  Genetics       Date:  2013-06       Impact factor: 4.562

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