Literature DB >> 12628929

The path from nucleolar 90S to cytoplasmic 40S pre-ribosomes.

Thorsten Schäfer1, Daniela Strauss, Elisabeth Petfalski, David Tollervey, Ed Hurt.   

Abstract

Recent reports have increased our knowledge of the consecutive steps during 60S ribosome biogenesis substantially, but 40S subunit formation is less well understood. Here, we investigate the maturation of nucleolar 90S pre-ribosomes into cytoplasmic 40S pre-ribosomes. During the transition from 90S to 40S particles, the majority of non-ribosomal proteins (approximately 30 species) dissociate, and significantly fewer factors associate with 40S pre-ribosomes. Notably, some of these components are part of both early 90S and intermediate 40S pre-particles in the nucleolus (e.g. Enp1p, Dim1p and Rrp12p), whereas others (e.g. Rio2p and Nob1p) are found mainly on late cytoplasmic pre-40S subunits. Finally, temperature-sensitive mutants mapping either in earlier (enp1-1) or later (rio2-1) components exhibit defects in the formation and nuclear export of pre-40S subunits. Our data provide an initial biochemical map of the pre-40S ribosomal subunit on its path from the nucleolus to the cytoplasm. This pathway involves fewer changes in composition than seen during 60S biogenesis.

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Year:  2003        PMID: 12628929      PMCID: PMC151049          DOI: 10.1093/emboj/cdg121

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  42 in total

Review 1.  Protein trans-acting factors involved in ribosome biogenesis in Saccharomyces cerevisiae.

Authors:  D Kressler; P Linder; J de La Cruz
Journal:  Mol Cell Biol       Date:  1999-12       Impact factor: 4.272

Review 2.  Nascent ribosomes.

Authors:  J R Warner
Journal:  Cell       Date:  2001-10-19       Impact factor: 41.582

3.  A nuclear AAA-type ATPase (Rix7p) is required for biogenesis and nuclear export of 60S ribosomal subunits.

Authors:  O Gadal; D Strauss; J Braspenning; D Hoepfner; E Petfalski; P Philippsen; D Tollervey; E Hurt
Journal:  EMBO J       Date:  2001-07-16       Impact factor: 11.598

4.  Identification of a 60S preribosomal particle that is closely linked to nuclear export.

Authors:  J Bassler; P Grandi; O Gadal; T Lessmann; E Petfalski; D Tollervey; J Lechner; E Hurt
Journal:  Mol Cell       Date:  2001-09       Impact factor: 17.970

5.  Composition and functional characterization of yeast 66S ribosome assembly intermediates.

Authors:  P Harnpicharnchai; J Jakovljevic; E Horsey; T Miles; J Roman; M Rout; D Meagher; B Imai; Y Guo; C J Brame; J Shabanowitz; D F Hunt; J L Woolford
Journal:  Mol Cell       Date:  2001-09       Impact factor: 17.970

6.  Nuclear export of 60s ribosomal subunits depends on Xpo1p and requires a nuclear export sequence-containing factor, Nmd3p, that associates with the large subunit protein Rpl10p.

Authors:  O Gadal; D Strauss; J Kessl; B Trumpower; D Tollervey; E Hurt
Journal:  Mol Cell Biol       Date:  2001-05       Impact factor: 4.272

7.  Bms1p, a novel GTP-binding protein, and the related Tsr1p are required for distinct steps of 40S ribosome biogenesis in yeast.

Authors:  D Gelperin; L Horton; J Beckman; J Hensold; S K Lemmon
Journal:  RNA       Date:  2001-09       Impact factor: 4.942

8.  Processing of 20S pre-rRNA to 18S ribosomal RNA in yeast requires Rrp10p, an essential non-ribosomal cytoplasmic protein.

Authors:  E Vanrobays; P E Gleizes; C Bousquet-Antonelli; J Noaillac-Depeyre; M Caizergues-Ferrer; J P Gélugne
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

9.  Nuclear export of the small ribosomal subunit requires the ran-GTPase cycle and certain nucleoporins.

Authors:  T I Moy; P A Silver
Journal:  Genes Dev       Date:  1999-08-15       Impact factor: 11.361

10.  Nmd3p is a Crm1p-dependent adapter protein for nuclear export of the large ribosomal subunit.

Authors:  J H Ho; G Kallstrom; A W Johnson
Journal:  J Cell Biol       Date:  2000-11-27       Impact factor: 10.539

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  171 in total

1.  Components of U3 snoRNA-containing complexes shuttle between nuclei and the cytoplasm and differentially localize in nucleoli: implications for assembly and function.

Authors:  Daniel J Leary; Michael P Terns; Sui Huang
Journal:  Mol Biol Cell       Date:  2003-10-17       Impact factor: 4.138

2.  Cic1p/Nsa3p is required for synthesis and nuclear export of 60S ribosomal subunits.

Authors:  Alessandro Fatica; Marlene Oeffinger; David Tollervey; Irene Bozzoni
Journal:  RNA       Date:  2003-12       Impact factor: 4.942

3.  Npa1p, a component of very early pre-60S ribosomal particles, associates with a subset of small nucleolar RNPs required for peptidyl transferase center modification.

Authors:  Christophe Dez; Carine Froment; Jacqueline Noaillac-Depeyre; Bernard Monsarrat; Michèle Caizergues-Ferrer; Yves Henry
Journal:  Mol Cell Biol       Date:  2004-07       Impact factor: 4.272

4.  PIN domain of Nob1p is required for D-site cleavage in 20S pre-rRNA.

Authors:  Alessandro Fatica; David Tollervey; Mensur Dlakić
Journal:  RNA       Date:  2004-09-23       Impact factor: 4.942

5.  Role of pre-rRNA base pairing and 80S complex formation in subnucleolar localization of the U3 snoRNP.

Authors:  Sander Granneman; Judith Vogelzangs; Reinhard Lührmann; Walther J van Venrooij; Ger J M Pruijn; Nicholas J Watkins
Journal:  Mol Cell Biol       Date:  2004-10       Impact factor: 4.272

6.  The small nucle(ol)ar RNA cap trimethyltransferase is required for ribosome synthesis and intact nucleolar morphology.

Authors:  Geoffroy Colau; Marc Thiry; Vivian Leduc; Rémy Bordonné; Denis L J Lafontaine
Journal:  Mol Cell Biol       Date:  2004-09       Impact factor: 4.272

7.  Dim2p, a KH-domain protein required for small ribosomal subunit synthesis.

Authors:  Emmanuel Vanrobays; Jean-Paul Gélugne; Michèle Caizergues-Ferrer; Denis L J Lafontaine
Journal:  RNA       Date:  2004-04       Impact factor: 4.942

8.  Las1L is a nucleolar protein required for cell proliferation and ribosome biogenesis.

Authors:  Christopher D Castle; Erica K Cassimere; Jinho Lee; Catherine Denicourt
Journal:  Mol Cell Biol       Date:  2010-07-20       Impact factor: 4.272

9.  Roles of Dim2 in ribosome assembly.

Authors:  Heather A Woolls; Allison C Lamanna; Katrin Karbstein
Journal:  J Biol Chem       Date:  2010-11-12       Impact factor: 5.157

10.  RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components.

Authors:  Jennifer E G Gallagher; David A Dunbar; Sander Granneman; Brianna M Mitchell; Yvonne Osheim; Ann L Beyer; Susan J Baserga
Journal:  Genes Dev       Date:  2004-10-15       Impact factor: 11.361

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