Literature DB >> 22680931

An outer membrane protein undergoes enthalpy- and entropy-driven transitions.

Belete R Cheneke1, Mridhu Indic, Bert van den Berg, Liviu Movileanu.   

Abstract

β-Barrel membrane proteins often fluctuate among various open substates, yet the nature of these transitions is not fully understood. Using temperature-dependent, single-molecule electrophysiology analysis, along with rational protein design, we show that OccK1, a member of the outer membrane carboxylate channel from Pseudomonas aeruginosa, features a discrete gating dynamics comprising both enthalpy-driven and entropy-driven current transitions. OccK1 was chosen for the analysis of these transitions, because it is a monomeric transmembrane β-barrel of a known high-resolution crystal structure and displays three distinguishable, time-resolvable open substates. Native and loop-deletion OccK1 proteins showed substantial changes in the activation enthalpies and entropies of the channel transitions, but modest alterations in the equilibrium free energies, confirming that the system never departs from equilibrium. Moreover, some current fluctuations of OccK1 indicated a counterintuitive, negative activation enthalpy, which was compensated by a significant decrease in the activation entropy. Temperature scanning of the single-channel properties of OccK1 exhibited a thermally induced switch of the energetically most favorable open substate at the lowest examined temperature of 4 °C. Therefore, such a semiquantitative assessment of the current fluctuation dynamics not only demonstrates the complexity of channel gating but also reveals distinct functional traits of a β-barrel outer membrane protein under different temperature circumstances.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22680931      PMCID: PMC3448022          DOI: 10.1021/bi300332z

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  60 in total

1.  Redesign of a plugged beta-barrel membrane protein.

Authors:  Mohammad M Mohammad; Khalil R Howard; Liviu Movileanu
Journal:  J Biol Chem       Date:  2010-12-28       Impact factor: 5.157

2.  Temperature-responsive protein pores.

Authors:  Yuni Jung; Hagan Bayley; Liviu Movileanu
Journal:  J Am Chem Soc       Date:  2006-11-29       Impact factor: 15.419

3.  Structure refinement of the OpcA adhesin using molecular dynamics.

Authors:  Binquan Luan; Martin Caffrey; Aleksei Aksimentiev
Journal:  Biophys J       Date:  2007-11-01       Impact factor: 4.033

4.  Temperature dependence of acetylcholine receptor channels activated by different agonists.

Authors:  Shaweta Gupta; Anthony Auerbach
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

Review 5.  Win some, lose some: enthalpy-entropy compensation in weak intermolecular interactions.

Authors:  J D Dunitz
Journal:  Chem Biol       Date:  1995-11

6.  Sampling, log binning, fitting, and plotting durations of open and shut intervals from single channels and the effects of noise.

Authors:  O B McManus; A L Blatz; K L Magleby
Journal:  Pflugers Arch       Date:  1987-11       Impact factor: 3.657

7.  Thermodynamics of CFTR channel gating: a spreading conformational change initiates an irreversible gating cycle.

Authors:  László Csanády; Angus C Nairn; David C Gadsby
Journal:  J Gen Physiol       Date:  2006-10-16       Impact factor: 4.086

8.  Role of the novel OprD family of porins in nutrient uptake in Pseudomonas aeruginosa.

Authors:  Sandeep Tamber; Martina M Ochs; Robert E W Hancock
Journal:  J Bacteriol       Date:  2006-01       Impact factor: 3.490

9.  pH-induced conformational change of the beta-barrel-forming protein OmpG reconstituted into native E. coli lipids.

Authors:  Stefania A Mari; Stefan Köster; Christian A Bippes; Ozkan Yildiz; Werner Kühlbrandt; Daniel J Muller
Journal:  J Mol Biol       Date:  2009-12-28       Impact factor: 5.469

10.  Substrate specificity within a family of outer membrane carboxylate channels.

Authors:  Elif Eren; Jagamya Vijayaraghavan; Jiaming Liu; Belete R Cheneke; Debra S Touw; Bryan W Lepore; Mridhu Indic; Liviu Movileanu; Bert van den Berg
Journal:  PLoS Biol       Date:  2012-01-17       Impact factor: 8.029

View more
  12 in total

Review 1.  Modeling and simulation of ion channels.

Authors:  Christopher Maffeo; Swati Bhattacharya; Jejoong Yoo; David Wells; Aleksei Aksimentiev
Journal:  Chem Rev       Date:  2012-10-04       Impact factor: 60.622

2.  Cation selectivity is a conserved feature in the OccD subfamily of Pseudomonas aeruginosa.

Authors:  Jiaming Liu; Aaron J Wolfe; Elif Eren; Jagamya Vijayaraghavan; Mridhu Indic; Bert van den Berg; Liviu Movileanu
Journal:  Biochim Biophys Acta       Date:  2012-07-21

3.  Does the lipid environment impact the open-state conductance of an engineered β-barrel protein nanopore?

Authors:  Noriko Tomita; Mohammad M Mohammad; David J Niedzwiecki; Makoto Ohta; Liviu Movileanu
Journal:  Biochim Biophys Acta       Date:  2012-12-11

4.  Global redesign of a native β-barrel scaffold.

Authors:  Aaron J Wolfe; Mohammad M Mohammad; Avinash K Thakur; Liviu Movileanu
Journal:  Biochim Biophys Acta       Date:  2015-10-09

5.  The Transmembrane Domain of a Bicomponent ABC Transporter Exhibits Channel-Forming Activity.

Authors:  Mohammad M Mohammad; Noriko Tomita; Makoto Ohta; Liviu Movileanu
Journal:  ACS Chem Biol       Date:  2016-07-19       Impact factor: 5.100

Review 6.  Watching single proteins using engineered nanopores.

Authors:  Liviu Movileanu
Journal:  Protein Pept Lett       Date:  2014-03       Impact factor: 1.890

7.  Entropy-enthalpy Compensation of Biomolecular Systems in Aqueous Phase: a Dry Perspective.

Authors:  Liviu Movileanu; Eric A Schiff
Journal:  Monatsh Chem       Date:  2013-01-01       Impact factor: 1.451

8.  Differential Enzyme Flexibility Probed Using Solid-State Nanopores.

Authors:  Rui Hu; João V Rodrigues; Pradeep Waduge; Hirohito Yamazaki; Benjamin Cressiot; Yasmin Chishti; Lee Makowski; Dapeng Yu; Eugene Shakhnovich; Qing Zhao; Meni Wanunu
Journal:  ACS Nano       Date:  2018-04-17       Impact factor: 18.027

9.  Quasithermodynamic contributions to the fluctuations of a protein nanopore.

Authors:  Belete R Cheneke; Bert van den Berg; Liviu Movileanu
Journal:  ACS Chem Biol       Date:  2014-12-15       Impact factor: 5.100

10.  Phase coexistence in single-lipid membranes induced by buffering agents.

Authors:  Merrell A Johnson; Soenke Seifert; Horia I Petrache; Ann C Kimble-Hill
Journal:  Langmuir       Date:  2014-08-13       Impact factor: 3.882

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.