Literature DB >> 22824298

Cation selectivity is a conserved feature in the OccD subfamily of Pseudomonas aeruginosa.

Jiaming Liu1, Aaron J Wolfe, Elif Eren, Jagamya Vijayaraghavan, Mridhu Indic, Bert van den Berg, Liviu Movileanu.   

Abstract

To achieve the uptake of small, water-soluble nutrients, Pseudomonas aeruginosa, a pathogenic Gram-negative bacterium, employs substrate-specific channels located within its outer membrane. In this paper, we present a detailed description of the single-channel characteristics of six members of the outer membrane carboxylate channel D (OccD) subfamily. Recent structural studies showed that the OccD proteins share common features, such as a closely related, monomeric, 18-stranded β-barrel conformation and large extracellular loops, which are folded back into the channel lumen. Here, we report that the OccD proteins displayed single-channel activity with a unitary conductance covering an unusually broad range, between 20 and 670pS, as well as a diverse gating dynamics. Interestingly, we found that cation selectivity is a conserved trait among all members of the OccD subfamily, bringing a new distinction between the members of the OccD subfamily and the anion-selective OccK channels. Conserved cation selectivity of the OccD channels is in accord with an increased specificity and selectivity of these proteins for positively charged, carboxylate-containing substrates.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22824298      PMCID: PMC3424372          DOI: 10.1016/j.bbamem.2012.07.009

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  52 in total

1.  Temperature-responsive protein pores.

Authors:  Yuni Jung; Hagan Bayley; Liviu Movileanu
Journal:  J Am Chem Soc       Date:  2006-11-29       Impact factor: 15.419

2.  Single-molecule electrophoresis of beta-hairpin peptides by electrical recordings and Langevin dynamics simulations.

Authors:  Carl P Goodrich; Serdal Kirmizialtin; Beatrice M Huyghues-Despointes; Aiping Zhu; J Martin Scholtz; Dmitrii E Makarov; Liviu Movileanu
Journal:  J Phys Chem B       Date:  2007-03-13       Impact factor: 2.991

3.  Involvement of two related porins, OprD and OpdP, in the uptake of arginine by Pseudomonas aeruginosa.

Authors:  Sandeep Tamber; Robert E W Hancock
Journal:  FEMS Microbiol Lett       Date:  2006-07       Impact factor: 2.742

4.  Structural insight into OprD substrate specificity.

Authors:  Shyamasri Biswas; Mohammad M Mohammad; Dimki R Patel; Liviu Movileanu; Bert van den Berg
Journal:  Nat Struct Mol Biol       Date:  2007-10-21       Impact factor: 15.369

5.  Catalyzing the translocation of polypeptides through attractive interactions.

Authors:  Aaron J Wolfe; Mohammad M Mohammad; Stephen Cheley; Hagan Bayley; Liviu Movileanu
Journal:  J Am Chem Soc       Date:  2007-10-19       Impact factor: 15.419

6.  Structure refinement of the OpcA adhesin using molecular dynamics.

Authors:  Binquan Luan; Martin Caffrey; Aleksei Aksimentiev
Journal:  Biophys J       Date:  2007-11-01       Impact factor: 4.033

7.  Controlling a single protein in a nanopore through electrostatic traps.

Authors:  Mohammad M Mohammad; Sumit Prakash; Andreas Matouschek; Liviu Movileanu
Journal:  J Am Chem Soc       Date:  2008-03-06       Impact factor: 15.419

8.  Excursion of a single polypeptide into a protein pore: simple physics, but complicated biology.

Authors:  Mohammad M Mohammad; Liviu Movileanu
Journal:  Eur Biophys J       Date:  2008-03-27       Impact factor: 1.733

9.  Role of the novel OprD family of porins in nutrient uptake in Pseudomonas aeruginosa.

Authors:  Sandeep Tamber; Martina M Ochs; Robert E W Hancock
Journal:  J Bacteriol       Date:  2006-01       Impact factor: 3.490

10.  Membrane simulations of OpcA: gating in the loops?

Authors:  Peter J Bond; Jeremy P Derrick; Mark S P Sansom
Journal:  Biophys J       Date:  2006-11-17       Impact factor: 4.033

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  13 in total

1.  Structure and Function of the PiuA and PirA Siderophore-Drug Receptors from Pseudomonas aeruginosa and Acinetobacter baumannii.

Authors:  Lucile Moynié; Alexandre Luscher; Dora Rolo; Daniel Pletzer; Antoni Tortajada; Helge Weingart; Yvonne Braun; Malcolm G P Page; James H Naismith; Thilo Köhler
Journal:  Antimicrob Agents Chemother       Date:  2017-03-24       Impact factor: 5.191

2.  Single-channel properties, sugar specificity, and role of chitoporin in adaptive survival of Vibrio cholerae type strain O1.

Authors:  Hannadige Sasimali Madusanka Soysa; Anuwat Aunkham; Albert Schulte; Wipa Suginta
Journal:  J Biol Chem       Date:  2020-05-14       Impact factor: 5.157

3.  Does the lipid environment impact the open-state conductance of an engineered β-barrel protein nanopore?

Authors:  Noriko Tomita; Mohammad M Mohammad; David J Niedzwiecki; Makoto Ohta; Liviu Movileanu
Journal:  Biochim Biophys Acta       Date:  2012-12-11

4.  Global redesign of a native β-barrel scaffold.

Authors:  Aaron J Wolfe; Mohammad M Mohammad; Avinash K Thakur; Liviu Movileanu
Journal:  Biochim Biophys Acta       Date:  2015-10-09

5.  The Transmembrane Domain of a Bicomponent ABC Transporter Exhibits Channel-Forming Activity.

Authors:  Mohammad M Mohammad; Noriko Tomita; Makoto Ohta; Liviu Movileanu
Journal:  ACS Chem Biol       Date:  2016-07-19       Impact factor: 5.100

Review 6.  Watching single proteins using engineered nanopores.

Authors:  Liviu Movileanu
Journal:  Protein Pept Lett       Date:  2014-03       Impact factor: 1.890

7.  CHEXVIS: a tool for molecular channel extraction and visualization.

Authors:  Talha Bin Masood; Sankaran Sandhya; Nagasuma Chandra; Vijay Natarajan
Journal:  BMC Bioinformatics       Date:  2015-04-16       Impact factor: 3.169

8.  Quasithermodynamic contributions to the fluctuations of a protein nanopore.

Authors:  Belete R Cheneke; Bert van den Berg; Liviu Movileanu
Journal:  ACS Chem Biol       Date:  2014-12-15       Impact factor: 5.100

9.  The OpdQ porin of Pseudomonas aeruginosa is regulated by environmental signals associated with cystic fibrosis including nitrate-induced regulation involving the NarXL two-component system.

Authors:  Randal C Fowler; Nancy D Hanson
Journal:  Microbiologyopen       Date:  2015-10-12       Impact factor: 3.139

10.  MOMP from Campylobacter jejuni Is a Trimer of 18-Stranded β-Barrel Monomers with a Ca2+ Ion Bound at the Constriction Zone.

Authors:  Luana G M Ferrara; Gregor D Wallat; Lucile Moynié; Naresh N Dhanasekar; Soumeya Aliouane; Silvia Acosta-Gutiérrez; Jean-Marie Pagès; Jean-Michel Bolla; Mathias Winterhalter; Matteo Ceccarelli; James H Naismith
Journal:  J Mol Biol       Date:  2016-09-30       Impact factor: 5.469

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