Literature DB >> 22644388

Molecular dynamics simulations of lipid membrane electroporation.

Lucie Delemotte1, Mounir Tarek.   

Abstract

The permeability of cell membranes can be transiently increased following the application of external electric fields. Theoretical approaches such as molecular modeling provide a significant insight into the processes affecting, at the molecular level, the integrity of lipid cell membranes when these are subject to voltage gradients under similar conditions as those used in experiments. This article reports on the progress made so far using such simulations to model membrane-lipid bilayer-electroporation. We first describe the methods devised to perform in silico experiments of membranes subject to nanosecond, megavolt-per-meter pulsed electric fields and of membranes subject to charge imbalance, mimicking therefore the application of low-voltage, long-duration pulses. We show then that, at the molecular level, the two types of pulses produce similar effects: provided the TM voltage these pulses create are higher than a certain threshold, hydrophilic pores stabilized by the membrane lipid headgroups form within the nanosecond time scale across the lipid core. Similarly, when the pulses are switched off, the pores collapse (close) within similar time scales. It is shown that for similar TM voltages applied, both methods induce similar electric field distributions within the membrane core. The cascade of events following the application of the pulses, and taking place at the membrane, is a direct consequence of such an electric field distribution.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22644388     DOI: 10.1007/s00232-012-9434-6

Source DB:  PubMed          Journal:  J Membr Biol        ISSN: 0022-2631            Impact factor:   1.843


  67 in total

1.  Model channel ion currents in NaCl-extended simple point charge water solution with applied-field molecular dynamics.

Authors:  P S Crozier; D Henderson; R L Rowley; D D Busath
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  The implementation of slab geometry for membrane-channel molecular dynamics simulations.

Authors:  David Bostick; Max L Berkowitz
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

3.  Imaging alpha-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map.

Authors:  Aleksij Aksimentiev; Klaus Schulten
Journal:  Biophys J       Date:  2005-03-11       Impact factor: 4.033

4.  Ion conduction through MscS as determined by electrophysiology and simulation.

Authors:  Marcos Sotomayor; Valeria Vásquez; Eduardo Perozo; Klaus Schulten
Journal:  Biophys J       Date:  2006-11-17       Impact factor: 4.033

5.  Membrane electroporation: The absolute rate equation and nanosecond time scale pore creation.

Authors:  Zlatko Vasilkoski; Axel T Esser; T R Gowrishankar; James C Weaver
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-08-03

6.  The membrane potential and its representation by a constant electric field in computer simulations.

Authors:  Benoît Roux
Journal:  Biophys J       Date:  2008-07-18       Impact factor: 4.033

7.  Reversible electrical breakdown of lipid bilayer membranes: a charge-pulse relaxation study.

Authors:  R Benz; F Beckers; U Zimmermann
Journal:  J Membr Biol       Date:  1979-07-16       Impact factor: 1.843

8.  Molecular dynamics simulation of a palmitoyl-oleoyl phosphatidylserine bilayer with Na+ counterions and NaCl.

Authors:  Parag Mukhopadhyay; Luca Monticelli; D Peter Tieleman
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

9.  Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations.

Authors:  Rainer A Böckmann; Bert L de Groot; Sergej Kakorin; Eberhard Neumann; Helmut Grubmüller
Journal:  Biophys J       Date:  2008-05-09       Impact factor: 4.033

10.  Electroporating fields target oxidatively damaged areas in the cell membrane.

Authors:  P Thomas Vernier; Zachary A Levine; Yu-Hsuan Wu; Vanessa Joubert; Matthew J Ziegler; Lluis M Mir; D Peter Tieleman
Journal:  PLoS One       Date:  2009-11-23       Impact factor: 3.240

View more
  36 in total

1.  Electroporation of DC-3F cells is a dual process.

Authors:  Lars H Wegner; Wolfgang Frey; Aude Silve
Journal:  Biophys J       Date:  2015-04-07       Impact factor: 4.033

2.  Terahertz Electric Field-Induced Membrane Electroporation by Molecular Dynamics Simulations.

Authors:  Jingchao Tang; Hairong Yin; Jialu Ma; Wenfei Bo; Yang Yang; Jin Xu; Yiyao Liu; Yubin Gong
Journal:  J Membr Biol       Date:  2018-08-09       Impact factor: 1.843

3.  Membrane potential and dynamics in a ternary lipid mixture: insights from molecular dynamics simulations.

Authors:  Xubo Lin; Vinay Nair; Yong Zhou; Alemayehu A Gorfe
Journal:  Phys Chem Chem Phys       Date:  2018-06-13       Impact factor: 3.676

4.  Atomistic simulations of pore formation and closure in lipid bilayers.

Authors:  W F Drew Bennett; Nicolas Sapay; D Peter Tieleman
Journal:  Biophys J       Date:  2014-01-07       Impact factor: 4.033

Review 5.  Electroporation in food processing and biorefinery.

Authors:  Samo Mahnič-Kalamiza; Eugène Vorobiev; Damijan Miklavčič
Journal:  J Membr Biol       Date:  2014-10-07       Impact factor: 1.843

6.  Dependence of Electroporation Detection Threshold on Cell Radius: An Explanation to Observations Non Compatible with Schwan's Equation Model.

Authors:  Borja Mercadal; P Thomas Vernier; Antoni Ivorra
Journal:  J Membr Biol       Date:  2016-05-11       Impact factor: 1.843

7.  Electroporation-mediated gene delivery.

Authors:  Jennifer L Young; David A Dean
Journal:  Adv Genet       Date:  2014-12-11       Impact factor: 1.944

8.  Membrane electroporation: chemical thermodynamics and flux kinetics revisited and refined.

Authors:  Eberhard Neumann; Sergej Kakorin
Journal:  Eur Biophys J       Date:  2018-05-08       Impact factor: 1.733

9.  Mathematical Models Describing Chinese Hamster Ovary Cell Death Due to Electroporation In Vitro.

Authors:  Janja Dermol; Damijan Miklavčič
Journal:  J Membr Biol       Date:  2015-07-30       Impact factor: 1.843

10.  Cancellation of cellular responses to nanoelectroporation by reversing the stimulus polarity.

Authors:  Andrei G Pakhomov; Iurii Semenov; Shu Xiao; Olga N Pakhomova; Betsy Gregory; Karl H Schoenbach; Jody C Ullery; Hope T Beier; Sambasiva R Rajulapati; Bennett L Ibey
Journal:  Cell Mol Life Sci       Date:  2014-04-21       Impact factor: 9.261

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.