Literature DB >> 11720976

Model channel ion currents in NaCl-extended simple point charge water solution with applied-field molecular dynamics.

P S Crozier1, D Henderson, R L Rowley, D D Busath.   

Abstract

Using periodic boundary conditions and a constant applied field, we have simulated current flow through an 8.125-A internal diameter, rigid, atomistic channel with polar walls in a rigid membrane using explicit ions and extended simple point charge water. Channel and bath currents were computed from 10 10-ns trajectories for each of 10 different conditions of concentration and applied voltage. An electric field was applied uniformly throughout the system to all mobile atoms. On average, the resultant net electric field falls primarily across the membrane channel, as expected for two conductive baths separated by a membrane capacitance. The channel is rarely occupied by more than one ion. Current-voltage relations are concentration dependent and superlinear at high concentrations.

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Year:  2001        PMID: 11720976      PMCID: PMC1301770          DOI: 10.1016/S0006-3495(01)75946-2

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  49 in total

1.  Molecular dynamics simulation of continuous current flow through a model biological membrane channel.

Authors:  P S Crozier; R L Rowley; N B Holladay; D Henderson; D D Busath
Journal:  Phys Rev Lett       Date:  2001-03-12       Impact factor: 9.161

2.  The cavity and pore helices in the KcsA K+ channel: electrostatic stabilization of monovalent cations.

Authors:  B Roux; R MacKinnon
Journal:  Science       Date:  1999-07-02       Impact factor: 47.728

3.  Tests of continuum theories as models of ion channels. II. Poisson-Nernst-Planck theory versus brownian dynamics.

Authors:  B Corry; S Kuyucak; S H Chung
Journal:  Biophys J       Date:  2000-05       Impact factor: 4.033

4.  Permeation of ions across the potassium channel: Brownian dynamics studies.

Authors:  S H Chung; T W Allen; M Hoyles; S Kuyucak
Journal:  Biophys J       Date:  1999-11       Impact factor: 4.033

5.  A model of calcium channels.

Authors:  B Corry; T W Allen; S Kuyucak; S H Chung
Journal:  Biochim Biophys Acta       Date:  2000-12-20

6.  Binding and selectivity in L-type calcium channels: a mean spherical approximation.

Authors:  W Nonner; L Catacuzzeno; B Eisenberg
Journal:  Biophys J       Date:  2000-10       Impact factor: 4.033

7.  Molecular dynamics of the KcsA K(+) channel in a bilayer membrane.

Authors:  S Bernèche; B Roux
Journal:  Biophys J       Date:  2000-06       Impact factor: 4.033

8.  Permeation through the calcium release channel of cardiac muscle.

Authors:  D Chen; L Xu; A Tripathy; G Meissner; B Eisenberg
Journal:  Biophys J       Date:  1997-09       Impact factor: 4.033

9.  Stochastic theory of singly occupied ion channels. II. Effects of access resistance and potential gradients extending into the bath.

Authors:  S W Chiu; E Jakobsson
Journal:  Biophys J       Date:  1989-01       Impact factor: 4.033

10.  Water and potassium dynamics inside the KcsA K(+) channel.

Authors:  L Guidoni; V Torre; P Carloni
Journal:  FEBS Lett       Date:  2000-07-14       Impact factor: 4.124

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  33 in total

1.  Role of the dielectric constants of membrane proteins and channel water in ion permeation.

Authors:  Turgut Baştuğ; Serdar Kuyucak
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

2.  The role of the dielectric barrier in narrow biological channels: a novel composite approach to modeling single-channel currents.

Authors:  Artem B Mamonov; Rob D Coalson; Abraham Nitzan; Maria G Kurnikova
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

3.  Microscopic Kinetics of DNA Translocation through synthetic nanopores.

Authors:  Aleksij Aksimentiev; Jiunn B Heng; Gregory Timp; Klaus Schulten
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

4.  A rotary nano ion pump: a molecular dynamics study.

Authors:  A Lohrasebi; M Feshanjerdi
Journal:  J Mol Model       Date:  2012-04-27       Impact factor: 1.810

5.  Molecular dynamics simulations of lipid membrane electroporation.

Authors:  Lucie Delemotte; Mounir Tarek
Journal:  J Membr Biol       Date:  2012-05-30       Impact factor: 1.843

6.  Deciphering ionic current signatures of DNA transport through a nanopore.

Authors:  Aleksei Aksimentiev
Journal:  Nanoscale       Date:  2010-02-02       Impact factor: 7.790

Review 7.  Constant electric field simulations of the membrane potential illustrated with simple systems.

Authors:  James Gumbart; Fatemeh Khalili-Araghi; Marcos Sotomayor; Benoît Roux
Journal:  Biochim Biophys Acta       Date:  2011-10-05

8.  Imaging alpha-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map.

Authors:  Aleksij Aksimentiev; Klaus Schulten
Journal:  Biophys J       Date:  2005-03-11       Impact factor: 4.033

9.  Electrolytic transport through a synthetic nanometer-diameter pore.

Authors:  Chuen Ho; Rui Qiao; Jiunn B Heng; Aveek Chatterjee; Rolf J Timp; Narayana R Aluru; Gregory Timp
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-14       Impact factor: 11.205

Review 10.  The role of molecular modeling in bionanotechnology.

Authors:  Deyu Lu; Aleksei Aksimentiev; Amy Y Shih; Eduardo Cruz-Chu; Peter L Freddolino; Anton Arkhipov; Klaus Schulten
Journal:  Phys Biol       Date:  2006-02-02       Impact factor: 2.583

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