Literature DB >> 22633822

Light-controlled synthetic gene circuits.

Laura Gardner1, Alexander Deiters.   

Abstract

Highly complex synthetic gene circuits have been engineered in living organisms to develop systems with new biological properties. A precise trigger to activate or deactivate these complex systems is desired in order to tightly control different parts of a synthetic or natural network. Light represents an excellent tool to achieve this goal as it can be regulated in timing, location, intensity, and wavelength, which allows for precise spatiotemporal control over genetic circuits. Recently, light has been used as a trigger to control the biological function of small molecules, oligonucleotides, and proteins involved as parts in gene circuits. Light activation has enabled the construction of unique systems in living organisms such as band-pass filters and edge-detectors in bacterial cells. Additionally, light also allows for the regulation of intermediate steps of complex dynamic pathways in mammalian cells such as those involved in kinase networks. Herein we describe recent advancements in the area of light-controlled synthetic networks.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22633822      PMCID: PMC3424386          DOI: 10.1016/j.cbpa.2012.04.010

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  46 in total

1.  Multichromatic control of gene expression in Escherichia coli.

Authors:  Jeffrey J Tabor; Anselm Levskaya; Christopher A Voigt
Journal:  J Mol Biol       Date:  2010-10-28       Impact factor: 5.469

2.  A synthetic genetic edge detection program.

Authors:  Jeffrey J Tabor; Howard M Salis; Zachary Booth Simpson; Aaron A Chevalier; Anselm Levskaya; Edward M Marcotte; Christopher A Voigt; Andrew D Ellington
Journal:  Cell       Date:  2009-06-26       Impact factor: 41.582

Review 3.  Decoding biological principles using gene circuits.

Authors:  Yu Tanouchi; Anand Pai; Lingchong You
Journal:  Mol Biosyst       Date:  2009-05-20

4.  Activation and deactivation of DNAzyme and antisense function with light for the photochemical regulation of gene expression in mammalian cells.

Authors:  Douglas D Young; Mark O Lively; Alexander Deiters
Journal:  J Am Chem Soc       Date:  2010-05-05       Impact factor: 15.419

5.  Light regulation of protein dimerization and kinase activity in living cells using photocaged rapamycin and engineered FKBP.

Authors:  Andrei V Karginov; Yan Zou; David Shirvanyants; Pradeep Kota; Nikolay V Dokholyan; Douglas D Young; Klaus M Hahn; Alexander Deiters
Journal:  J Am Chem Soc       Date:  2010-12-16       Impact factor: 15.419

6.  Patterning of gene expression using new photolabile groups applied to light activated RNAi.

Authors:  Piyush K Jain; Samit Shah; Simon H Friedman
Journal:  J Am Chem Soc       Date:  2010-12-16       Impact factor: 15.419

7.  Photocaged t7 RNA polymerase for the light activation of transcription and gene function in pro- and eukaryotic cells.

Authors:  Chungjung Chou; Douglas D Young; Alexander Deiters
Journal:  Chembiochem       Date:  2010-05-03       Impact factor: 3.164

Review 8.  Recent advances in the photochemical control of protein function.

Authors:  Chad W Riggsbee; Alexander Deiters
Journal:  Trends Biotechnol       Date:  2010-07-29       Impact factor: 19.536

9.  Light-based feedback for controlling intracellular signaling dynamics.

Authors:  Jared E Toettcher; Delquin Gong; Wendell A Lim; Orion D Weiner
Journal:  Nat Methods       Date:  2011-09-11       Impact factor: 28.547

10.  A genetically encoded photoactivatable Rac controls the motility of living cells.

Authors:  Yi I Wu; Daniel Frey; Oana I Lungu; Angelika Jaehrig; Ilme Schlichting; Brian Kuhlman; Klaus M Hahn
Journal:  Nature       Date:  2009-08-19       Impact factor: 49.962

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  16 in total

1.  Intracellular light-activation of riboswitch activity.

Authors:  Steven Walsh; Laura Gardner; Alexander Deiters; Gavin J Williams
Journal:  Chembiochem       Date:  2014-05-26       Impact factor: 3.164

2.  A light-controlled cell lysis system in bacteria.

Authors:  Geyi Wang; Xin Lu; Yisha Zhu; Wei Zhang; Jiahui Liu; Yankang Wu; Liyang Yu; Dongchang Sun; Feng Cheng
Journal:  J Ind Microbiol Biotechnol       Date:  2018-05-08       Impact factor: 3.346

3.  Optical Control of DNA Helicase Function through Genetic Code Expansion.

Authors:  Ji Luo; Muwen Kong; Lili Liu; Subhas Samanta; Bennett Van Houten; Alexander Deiters
Journal:  Chembiochem       Date:  2017-01-25       Impact factor: 3.164

4.  An Engineered Optogenetic Switch for Spatiotemporal Control of Gene Expression, Cell Differentiation, and Tissue Morphogenesis.

Authors:  Lauren R Polstein; Mark Juhas; Gabi Hanna; Nenad Bursac; Charles A Gersbach
Journal:  ACS Synth Biol       Date:  2017-09-06       Impact factor: 5.110

5.  Optochemical control of deoxyoligonucleotide function via a nucleobase-caging approach.

Authors:  Qingyang Liu; Alexander Deiters
Journal:  Acc Chem Res       Date:  2013-08-28       Impact factor: 22.384

6.  Multiplexed Photoactivation of mRNA with Single-Cell Resolution.

Authors:  Dongyang Zhang; Shuaijiang Jin; Xijun Piao; Neal K Devaraj
Journal:  ACS Chem Biol       Date:  2020-06-12       Impact factor: 5.100

7.  Genetically encoded light-activated transcription for spatiotemporal control of gene expression and gene silencing in mammalian cells.

Authors:  James Hemphill; Chungjung Chou; Jason W Chin; Alexander Deiters
Journal:  J Am Chem Soc       Date:  2013-08-27       Impact factor: 15.419

Review 8.  Regulating CRISPR/Cas9 Function through Conditional Guide RNA Control.

Authors:  Wes Brown; Wenyuan Zhou; Alexander Deiters
Journal:  Chembiochem       Date:  2020-11-17       Impact factor: 3.164

9.  Control of RNA with quinone methide reversible acylating reagents.

Authors:  Hyun Shin Park; Biswarup Jash; Lu Xiao; Yong Woong Jun; Eric T Kool
Journal:  Org Biomol Chem       Date:  2021-10-06       Impact factor: 3.890

10.  Control of protein function through optochemical translocation.

Authors:  Hanna Engelke; Chungjung Chou; Rajendra Uprety; Phillip Jess; Alexander Deiters
Journal:  ACS Synth Biol       Date:  2014-02-26       Impact factor: 5.110

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