Literature DB >> 22633067

DNA synthesis, assembly and applications in synthetic biology.

Siying Ma1, Nicholas Tang, Jingdong Tian.   

Abstract

The past couple of years saw exciting new developments in microchip-based gene synthesis technologies. Such technologies hold the potential for significantly increasing the throughput and decreasing the cost of gene synthesis. Together with more efficient enzymatic error correction and genome assembly methods, these new technologies are pushing the field of synthetic biology to a higher level.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22633067      PMCID: PMC3424320          DOI: 10.1016/j.cbpa.2012.05.001

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  47 in total

1.  Parallel on-chip gene synthesis and application to optimization of protein expression.

Authors:  Jiayuan Quan; Ishtiaq Saaem; Nicholas Tang; Siying Ma; Nicolas Negre; Hui Gong; Kevin P White; Jingdong Tian
Journal:  Nat Biotechnol       Date:  2011-04-24       Impact factor: 54.908

Review 2.  Advancing high-throughput gene synthesis technology.

Authors:  Jingdong Tian; Kuosheng Ma; Ishtiaq Saaem
Journal:  Mol Biosyst       Date:  2009-04-06

Review 3.  DNA assembly for synthetic biology: from parts to pathways and beyond.

Authors:  Tom Ellis; Tom Adie; Geoff S Baldwin
Journal:  Integr Biol (Camb)       Date:  2011-01-19       Impact factor: 2.192

4.  Complete reconstitution of a highly reducing iterative polyketide synthase.

Authors:  Suzanne M Ma; Jesse W-H Li; Jin W Choi; Hui Zhou; K K Michael Lee; Vijayalakshmi A Moorthie; Xinkai Xie; James T Kealey; Nancy A Da Silva; John C Vederas; Yi Tang
Journal:  Science       Date:  2009-10-23       Impact factor: 47.728

5.  Pairwise selection assembly for sequence-independent construction of long-length DNA.

Authors:  William J Blake; Brad A Chapman; Anuradha Zindal; Michael E Lee; Shaun M Lippow; Brian M Baynes
Journal:  Nucleic Acids Res       Date:  2010-03-01       Impact factor: 16.971

6.  Microfluidic PicoArray synthesis of oligodeoxynucleotides and simultaneous assembling of multiple DNA sequences.

Authors:  Xiaochuan Zhou; Shiying Cai; Ailing Hong; Qimin You; Peilin Yu; Nijing Sheng; Onnop Srivannavit; Seema Muranjan; Jean Marie Rouillard; Yongmei Xia; Xiaolin Zhang; Qin Xiang; Renuka Ganesh; Qi Zhu; Anna Matejko; Erdogan Gulari; Xiaolian Gao
Journal:  Nucleic Acids Res       Date:  2004-10-11       Impact factor: 16.971

7.  Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.

Authors:  Daniel G Gibson; Gwynedd A Benders; Cynthia Andrews-Pfannkoch; Evgeniya A Denisova; Holly Baden-Tillson; Jayshree Zaveri; Timothy B Stockwell; Anushka Brownley; David W Thomas; Mikkel A Algire; Chuck Merryman; Lei Young; Vladimir N Noskov; John I Glass; J Craig Venter; Clyde A Hutchison; Hamilton O Smith
Journal:  Science       Date:  2008-01-24       Impact factor: 47.728

8.  Programming cells by multiplex genome engineering and accelerated evolution.

Authors:  Harris H Wang; Farren J Isaacs; Peter A Carr; Zachary Z Sun; George Xu; Craig R Forest; George M Church
Journal:  Nature       Date:  2009-07-26       Impact factor: 49.962

9.  DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways.

Authors:  Zengyi Shao; Hua Zhao; Huimin Zhao
Journal:  Nucleic Acids Res       Date:  2008-12-12       Impact factor: 16.971

10.  Circular polymerase extension cloning of complex gene libraries and pathways.

Authors:  Jiayuan Quan; Jingdong Tian
Journal:  PLoS One       Date:  2009-07-30       Impact factor: 3.240

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  32 in total

Review 1.  Carbon-based archiving: current progress and future prospects of DNA-based data storage.

Authors:  Zhi Ping; Dongzhao Ma; Xiaoluo Huang; Shihong Chen; Longying Liu; Fei Guo; Sha Joe Zhu; Yue Shen
Journal:  Gigascience       Date:  2019-06-01       Impact factor: 6.524

2.  Synthetic biology advances and applications in the biotechnology industry: a perspective.

Authors:  Leonard Katz; Yvonne Y Chen; Ramon Gonzalez; Todd C Peterson; Huimin Zhao; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2018-06-18       Impact factor: 3.346

Review 3.  Strategies for metabolic pathway engineering with multiple transgenes.

Authors:  Ralph Bock
Journal:  Plant Mol Biol       Date:  2013-03-17       Impact factor: 4.076

4.  Algorithmic co-optimization of genetic constructs and growth conditions: application to 6-ACA, a potential nylon-6 precursor.

Authors:  Hui Zhou; Brenda Vonk; Johannes A Roubos; Roel A L Bovenberg; Christopher A Voigt
Journal:  Nucleic Acids Res       Date:  2015-10-30       Impact factor: 16.971

5.  Programming biological operating systems: genome design, assembly and activation.

Authors:  Daniel G Gibson
Journal:  Nat Methods       Date:  2014-05       Impact factor: 28.547

Review 6.  Biotechnological domestication of pseudomonads using synthetic biology.

Authors:  Pablo I Nikel; Esteban Martínez-García; Víctor de Lorenzo
Journal:  Nat Rev Microbiol       Date:  2014-05       Impact factor: 60.633

7.  A systematic comparison of error correction enzymes by next-generation sequencing.

Authors:  Nathan B Lubock; Di Zhang; Angus M Sidore; George M Church; Sriram Kosuri
Journal:  Nucleic Acids Res       Date:  2017-09-06       Impact factor: 16.971

8.  Next generation 1536-well oligonucleotide synthesizer with on-the-fly dispense.

Authors:  Michael Jensen; Lester Roberts; Andrew Johnson; Marilyn Fukushima; Ronald Davis
Journal:  J Biotechnol       Date:  2013-12-16       Impact factor: 3.307

9.  Multiplexed gene synthesis in emulsions for exploring protein functional landscapes.

Authors:  Calin Plesa; Angus M Sidore; Nathan B Lubock; Di Zhang; Sriram Kosuri
Journal:  Science       Date:  2018-01-04       Impact factor: 47.728

Review 10.  Synthetic biology: advancing the design of diverse genetic systems.

Authors:  Yen-Hsiang Wang; Kathy Y Wei; Christina D Smolke
Journal:  Annu Rev Chem Biomol Eng       Date:  2013-02-13       Impact factor: 11.059

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