Literature DB >> 31220251

Carbon-based archiving: current progress and future prospects of DNA-based data storage.

Zhi Ping1, Dongzhao Ma1, Xiaoluo Huang1, Shihong Chen1, Longying Liu1, Fei Guo1, Sha Joe Zhu2, Yue Shen1.   

Abstract

The information explosion has led to a rapid increase in the amount of data requiring physical storage. However, in the near future, existing storage methods (i.e., magnetic and optical media) will be insufficient to store these exponentially growing data. Therefore, data scientists are continually looking for better, more stable, and space-efficient alternatives to store these huge datasets. Because of its unique biological properties, highly condensed DNA has great potential to become a storage material for the future. Indeed, DNA-based data storage has recently emerged as a promising approach for long-term digital information storage. This review summarizes state-of-the-art methods, including digital-to-DNA coding schemes and the media types used in DNA-based data storage, and provides an overview of recent progress achieved in this field and its exciting future.
© The Author(s) 2019. Published by Oxford University Press.

Entities:  

Keywords:  zzm321990 in vitro DNA digital storage; zzm321990 in vivo DNA digital storage; DNA digital storage; binary-DNA encoding scheme

Mesh:

Substances:

Year:  2019        PMID: 31220251      PMCID: PMC6586197          DOI: 10.1093/gigascience/giz075

Source DB:  PubMed          Journal:  Gigascience        ISSN: 2047-217X            Impact factor:   6.524


  32 in total

1.  Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays.

Authors:  S Brenner; M Johnson; J Bridgham; G Golda; D H Lloyd; D Johnson; S Luo; S McCurdy; M Foy; M Ewan; R Roth; D George; S Eletr; G Albrecht; E Vermaas; S R Williams; K Moon; T Burcham; M Pallas; R B DuBridge; J Kirchner; K Fearon; J Mao; K Corcoran
Journal:  Nat Biotechnol       Date:  2000-06       Impact factor: 54.908

2.  Long-term storage of information in DNA.

Authors:  C Bancroft; T Bowler; B Bloom; C T Clelland
Journal:  Science       Date:  2001-09-07       Impact factor: 47.728

3.  Accurate multiplex gene synthesis from programmable DNA microchips.

Authors:  Jingdong Tian; Hui Gong; Nijing Sheng; Xiaochuan Zhou; Erdogan Gulari; Xiaolian Gao; George Church
Journal:  Nature       Date:  2004-12-23       Impact factor: 49.962

4.  A new method for sequencing DNA.

Authors:  A M Maxam; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1977-02       Impact factor: 11.205

5.  Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array.

Authors:  S Singh-Gasson; R D Green; Y Yue; C Nelson; F Blattner; M R Sussman; F Cerrina
Journal:  Nat Biotechnol       Date:  1999-10       Impact factor: 54.908

Review 6.  DNA sequencing at 40: past, present and future.

Authors:  Jay Shendure; Shankar Balasubramanian; George M Church; Walter Gilbert; Jane Rogers; Jeffery A Schloss; Robert H Waterston
Journal:  Nature       Date:  2017-10-11       Impact factor: 49.962

7.  Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing.

Authors:  Heewook Lee; Ellen Popodi; Haixu Tang; Patricia L Foster
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-18       Impact factor: 11.205

8.  Hachimoji DNA and RNA: A genetic system with eight building blocks.

Authors:  Shuichi Hoshika; Nicole A Leal; Myong-Jung Kim; Myong-Sang Kim; Nilesh B Karalkar; Hyo-Joong Kim; Alison M Bates; Norman E Watkins; Holly A SantaLucia; Adam J Meyer; Saurja DasGupta; Joseph A Piccirilli; Andrew D Ellington; John SantaLucia; Millie M Georgiadis; Steven A Benner
Journal:  Science       Date:  2019-02-22       Impact factor: 47.728

9.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

10.  Portable and Error-Free DNA-Based Data Storage.

Authors:  S M Hossein Tabatabaei Yazdi; Ryan Gabrys; Olgica Milenkovic
Journal:  Sci Rep       Date:  2017-07-10       Impact factor: 4.379

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  3 in total

1.  An Intelligent Optimization Algorithm for Constructing a DNA Storage Code: NOL-HHO.

Authors:  Qiang Yin; Ben Cao; Xue Li; Bin Wang; Qiang Zhang; Xiaopeng Wei
Journal:  Int J Mol Sci       Date:  2020-03-22       Impact factor: 5.923

2.  Robust data storage in DNA by de Bruijn graph-based de novo strand assembly.

Authors:  Lifu Song; Feng Geng; Zi-Yi Gong; Xin Chen; Jijun Tang; Chunye Gong; Libang Zhou; Rui Xia; Ming-Zhe Han; Jing-Yi Xu; Bing-Zhi Li; Ying-Jin Yuan
Journal:  Nat Commun       Date:  2022-09-12       Impact factor: 17.694

3.  A self-contained and self-explanatory DNA storage system.

Authors:  Min Li; Jiashu Wu; Junbiao Dai; Qingshan Jiang; Qiang Qu; Xiaoluo Huang; Yang Wang
Journal:  Sci Rep       Date:  2021-09-10       Impact factor: 4.379

  3 in total

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