Literature DB >> 22590418

(E)-2-[2-(4-Chloro-benzyl-idene)hydrazin-1-yl]-4-{[3-(dimethyl-aza-nium-yl)prop-yl]amino}-quinazolin-1-ium bis-(perchlorate).

Nan Jiang, Jian Zuo, Haiyan Wang, Ming Han, Xin Zhai.   

Abstract

In the title compound, C(20)H(25)ClN(6) (2+)·2ClO(4) (-), the organic cation is roughly planar, as shown by the dihedral angle of 3.78 (3)° between the quinazoline and chloro-phenyl rings. The quinazoline ring is itself approximately planar, with an average deviation of 0.018 (4) Å. The organic cation adopts an E configuration with respect to the C= N double bond of the hyrazinyl group. The (dimethyl-aza-nium-yl)propyl-amino side chain is disordered over two sets of sites with occupancies of 0.768 (10) and 0.232 (10). In the crystal, two cations and four anions are linked by strong N-H⋯O hydrogen bonds. Weak C-H⋯O hydrogen bonds exist among these aggregates.

Entities:  

Year:  2012        PMID: 22590418      PMCID: PMC3344656          DOI: 10.1107/S1600536812018272

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For anti­tumor background to the title compound, see: Abouzid & Shouman (2008 ▶); Zhang et al. (2008 ▶); An et al. (2010 ▶); Horiuchi et al. (2009) ▶. For the structures of closely related compounds, see: Fun et al. (2010 ▶); Ferreira et al. (2009 ▶); de Souza et al. (2010 ▶); Loh et al. (2011 ▶).

Experimental

Crystal data

C20H25ClN6 2+·2ClO4 − M = 583.81 Triclinic, a = 10.4533 (18) Å b = 10.5018 (18) Å c = 12.626 (2) Å α = 104.745 (9)° β = 91.146 (10)° γ = 96.21 (1)° V = 1330.9 (4) Å3 Z = 2 Mo Kα radiation μ = 0.40 mm−1 T = 293 K 0.25 × 0.23 × 0.18 mm

Data collection

Siemens SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.907, T max = 0.932 12435 measured reflections 4889 independent reflections 3979 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.071 wR(F 2) = 0.219 S = 1.09 4889 reflections 371 parameters 62 restraints H-atom parameters constrained Δρmax = 0.69 e Å−3 Δρmin = −0.92 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812018272/im2363sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812018272/im2363Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812018272/im2363Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H25ClN62+·2ClO4Z = 2
Mr = 583.81F(000) = 604
Triclinic, P1Dx = 1.457 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 10.4533 (18) ÅCell parameters from 4829 reflections
b = 10.5018 (18) Åθ = 2.5–30.1°
c = 12.626 (2) ŵ = 0.40 mm1
α = 104.745 (9)°T = 293 K
β = 91.146 (10)°Block, colorless
γ = 96.21 (1)°0.25 × 0.23 × 0.18 mm
V = 1330.9 (4) Å3
Siemens SMART CCD area-detector diffractometer4889 independent reflections
Radiation source: fine-focus sealed tube3979 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
phi and ω scansθmax = 25.5°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.907, Tmax = 0.932k = −12→12
12435 measured reflectionsl = −14→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.071Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.219H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.1339P)2 + 1.0689P] where P = (Fo2 + 2Fc2)/3
4889 reflections(Δ/σ)max < 0.001
371 parametersΔρmax = 0.69 e Å3
62 restraintsΔρmin = −0.92 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl10.32941 (8)0.74253 (8)0.10002 (7)0.0433 (3)
Cl20.26374 (10)0.25136 (12)0.61278 (8)0.0638 (4)
Cl3−0.49702 (12)0.78162 (13)−0.25924 (10)0.0702 (4)
N20.2182 (3)0.4226 (3)0.3840 (3)0.0455 (7)
H2D0.22130.36020.41660.055*
N30.1121 (3)0.5197 (3)0.2718 (2)0.0391 (6)
N4−0.0771 (3)0.4117 (3)0.1697 (2)0.0380 (6)
H4C−0.13790.41350.12340.046*
N50.0158 (3)0.6172 (3)0.1555 (2)0.0399 (6)
H5C0.07810.68060.17100.048*
N6−0.0855 (3)0.6209 (3)0.0851 (2)0.0369 (6)
O10.3001 (3)0.6543 (3)−0.0088 (2)0.0553 (7)
O20.2245 (3)0.8192 (3)0.1395 (3)0.0617 (8)
O30.3692 (3)0.6777 (3)0.1811 (2)0.0582 (7)
O40.4611 (4)0.8581 (4)0.0865 (4)0.1015 (14)
O50.1324 (4)0.2708 (10)0.6082 (4)0.201 (4)
O60.2930 (6)0.1273 (4)0.6352 (4)0.123 (2)
O70.3248 (4)0.2711 (4)0.5170 (3)0.0731 (9)
O80.3333 (5)0.3762 (5)0.7247 (4)0.1072 (14)
C10.3790 (6)0.9314 (8)0.3904 (6)0.094 (3)0.768 (10)
H1B0.35510.96630.33060.141*0.768 (10)
H1C0.46120.89870.37830.141*0.768 (10)
H1D0.38421.00010.45760.141*0.768 (10)
C20.1534 (15)0.8623 (13)0.3983 (9)0.054 (3)0.768 (10)
H2A0.08940.79150.40330.081*0.768 (10)
H2B0.13730.88770.33180.081*0.768 (10)
H2C0.14930.93700.46010.081*0.768 (10)
N10.2784 (4)0.8189 (4)0.3980 (3)0.0711 (11)0.768 (10)
H1A0.28180.75000.33790.085*0.768 (10)
C30.3380 (7)0.7866 (6)0.4925 (5)0.071 (2)0.768 (10)
H3A0.32520.85260.55960.085*0.768 (10)
H3B0.42970.78390.48410.085*0.768 (10)
C40.2729 (9)0.6522 (6)0.4957 (5)0.079 (3)0.768 (10)
H4A0.18070.65040.48360.095*0.768 (10)
H4B0.28810.63970.56830.095*0.768 (10)
C50.3222 (4)0.5303 (4)0.4057 (4)0.0635 (12)0.768 (10)
H5A0.34230.55630.33900.076*0.768 (10)
H5B0.39900.50330.43400.076*0.768 (10)
C1'0.4014 (16)0.885 (3)0.438 (2)0.081 (7)0.232 (10)
H1'B0.46120.82060.43390.121*0.232 (10)
H1'C0.39720.93460.51240.121*0.232 (10)
H1'D0.42970.94370.39360.121*0.232 (10)
C2'0.156 (4)0.896 (4)0.397 (4)0.059 (11)0.232 (10)
H2'A0.16760.95180.34780.089*0.232 (10)
H2'B0.14520.94920.46970.089*0.232 (10)
H2'C0.08050.83310.37340.089*0.232 (10)
N1'0.2784 (4)0.8189 (4)0.3980 (3)0.0711 (11)0.232 (10)
H1'A0.28440.76280.33070.085*0.232 (10)
C3'0.2400 (10)0.7379 (10)0.4811 (8)0.027 (4)0.232 (10)
H3'A0.22590.79830.55080.032*0.232 (10)
H3'B0.15940.68250.45520.032*0.232 (10)
C4'0.3425 (12)0.6497 (11)0.4986 (10)0.033 (4)0.232 (10)
H4'A0.42830.69540.49920.040*0.232 (10)
H4'B0.33200.62610.56760.040*0.232 (10)
C5'0.3222 (4)0.5303 (4)0.4057 (4)0.0635 (12)0.232 (10)
H5'A0.32290.56340.34070.076*0.232 (10)
H5'B0.40030.48810.40560.076*0.232 (10)
C60.1190 (3)0.4168 (3)0.3162 (3)0.0377 (7)
C70.0215 (3)0.3013 (3)0.2901 (3)0.0377 (7)
C80.0235 (4)0.1903 (4)0.3319 (3)0.0476 (8)
H80.08810.18910.38330.057*
C9−0.0688 (4)0.0830 (4)0.2980 (3)0.0523 (9)
H9−0.06630.00930.32580.063*
C10−0.1655 (4)0.0850 (4)0.2224 (3)0.0535 (9)
H10−0.22790.01210.19980.064*
C11−0.1714 (4)0.1935 (4)0.1798 (3)0.0491 (9)
H11−0.23750.19400.12970.059*
C12−0.0763 (3)0.3026 (3)0.2132 (3)0.0384 (7)
C130.0161 (3)0.5139 (3)0.1994 (3)0.0353 (7)
C14−0.0831 (3)0.7243 (3)0.0498 (3)0.0398 (7)
H14−0.01540.79180.07220.048*
C15−0.1847 (3)0.7380 (3)−0.0249 (3)0.0376 (7)
C16−0.2904 (3)0.6397 (3)−0.0569 (3)0.0425 (8)
H16−0.29630.5654−0.02920.051*
C17−0.3850 (4)0.6532 (4)−0.1289 (3)0.0478 (9)
H17−0.45470.5880−0.15060.057*
C18−0.3756 (3)0.7649 (4)−0.1690 (3)0.0440 (8)
C19−0.2739 (4)0.8635 (4)−0.1393 (3)0.0464 (8)
H19−0.26890.9374−0.16760.056*
C20−0.1798 (3)0.8500 (3)−0.0664 (3)0.0437 (8)
H20−0.11130.9168−0.04420.052*
U11U22U33U12U13U23
Cl10.0423 (5)0.0379 (5)0.0468 (5)−0.0048 (3)−0.0039 (3)0.0099 (4)
Cl20.0543 (6)0.0819 (8)0.0474 (6)−0.0141 (5)−0.0011 (4)0.0116 (5)
Cl30.0688 (7)0.0759 (8)0.0666 (7)0.0096 (6)−0.0302 (5)0.0216 (6)
N20.0436 (16)0.0429 (16)0.0513 (17)0.0030 (12)−0.0128 (13)0.0165 (13)
N30.0363 (14)0.0390 (15)0.0406 (15)0.0044 (11)−0.0049 (11)0.0086 (12)
N40.0353 (14)0.0420 (15)0.0369 (14)0.0026 (11)−0.0058 (11)0.0119 (12)
N50.0338 (14)0.0432 (16)0.0436 (15)0.0020 (11)−0.0071 (11)0.0144 (12)
N60.0329 (13)0.0410 (15)0.0375 (14)0.0041 (11)−0.0051 (11)0.0119 (12)
O10.0659 (17)0.0486 (15)0.0455 (14)−0.0049 (13)−0.0153 (12)0.0072 (12)
O20.0433 (15)0.0480 (16)0.090 (2)−0.0004 (12)0.0120 (14)0.0124 (15)
O30.0685 (18)0.0532 (16)0.0528 (16)−0.0003 (13)−0.0138 (13)0.0178 (13)
O40.081 (3)0.082 (3)0.126 (3)−0.016 (2)0.024 (2)0.008 (2)
O50.042 (2)0.408 (12)0.098 (4)0.007 (4)−0.017 (2)−0.026 (5)
O60.222 (6)0.058 (2)0.084 (3)−0.029 (3)0.009 (3)0.029 (2)
O70.092 (2)0.086 (2)0.0534 (17)0.0278 (19)0.0155 (16)0.0313 (16)
O80.091 (3)0.111 (3)0.102 (3)0.006 (2)−0.008 (2)−0.001 (3)
C10.047 (3)0.133 (7)0.067 (4)0.006 (4)−0.015 (3)−0.034 (4)
C20.064 (5)0.042 (8)0.051 (4)0.011 (5)−0.003 (3)0.002 (4)
N10.096 (3)0.074 (2)0.0416 (18)0.044 (2)−0.0082 (17)−0.0013 (16)
C30.078 (5)0.075 (4)0.054 (3)0.008 (4)−0.011 (3)0.006 (3)
C40.095 (6)0.089 (5)0.037 (3)−0.045 (5)−0.012 (3)0.011 (3)
C50.064 (3)0.056 (2)0.072 (3)−0.012 (2)−0.034 (2)0.031 (2)
C1'0.094 (11)0.083 (10)0.079 (10)0.007 (8)−0.001 (8)0.048 (9)
C2'0.037 (11)0.009 (12)0.12 (2)0.001 (8)0.015 (11)0.005 (10)
N1'0.096 (3)0.074 (2)0.0416 (18)0.044 (2)−0.0082 (17)−0.0013 (16)
C3'0.026 (7)0.016 (6)0.029 (6)−0.008 (5)−0.003 (5)−0.009 (5)
C4'0.016 (6)0.052 (7)0.028 (6)−0.018 (5)−0.016 (5)0.013 (5)
C5'0.064 (3)0.056 (2)0.072 (3)−0.012 (2)−0.034 (2)0.031 (2)
C60.0398 (17)0.0392 (17)0.0345 (16)0.0077 (13)−0.0010 (13)0.0095 (13)
C70.0377 (17)0.0405 (18)0.0348 (16)0.0041 (13)−0.0003 (13)0.0100 (13)
C80.050 (2)0.049 (2)0.049 (2)0.0068 (16)−0.0018 (16)0.0198 (16)
C90.055 (2)0.048 (2)0.057 (2)0.0001 (17)0.0010 (18)0.0220 (18)
C100.054 (2)0.046 (2)0.059 (2)−0.0074 (17)−0.0009 (18)0.0162 (18)
C110.0455 (19)0.054 (2)0.047 (2)−0.0047 (16)−0.0081 (15)0.0169 (17)
C120.0374 (16)0.0400 (18)0.0375 (17)0.0020 (13)0.0027 (13)0.0102 (14)
C130.0353 (16)0.0379 (17)0.0333 (15)0.0085 (13)0.0006 (12)0.0088 (13)
C140.0372 (17)0.0385 (18)0.0428 (18)0.0018 (13)−0.0055 (13)0.0102 (14)
C150.0394 (17)0.0347 (17)0.0379 (16)0.0065 (13)−0.0014 (13)0.0073 (13)
C160.0475 (19)0.0337 (17)0.0449 (18)0.0031 (14)−0.0054 (15)0.0091 (14)
C170.049 (2)0.0392 (19)0.049 (2)0.0010 (15)−0.0108 (16)0.0037 (15)
C180.0437 (18)0.051 (2)0.0357 (17)0.0128 (15)−0.0069 (14)0.0059 (15)
C190.052 (2)0.0432 (19)0.050 (2)0.0102 (16)−0.0016 (16)0.0206 (16)
C200.0400 (18)0.0367 (18)0.056 (2)0.0017 (14)−0.0035 (15)0.0155 (15)
Cl1—O31.444 (3)C5—H5A0.9700
Cl1—O21.452 (3)C5—H5B0.9700
Cl1—O11.454 (3)C1'—H1'B0.9600
Cl1—O41.775 (4)C1'—H1'C0.9600
Cl2—O51.412 (5)C1'—H1'D0.9600
Cl2—O71.430 (3)C2'—H2'A0.9600
Cl2—O61.464 (5)C2'—H2'B0.9600
Cl2—O81.747 (5)C2'—H2'C0.9600
Cl3—C181.741 (4)C3'—C4'1.538 (10)
N2—C61.318 (4)C3'—H3'A0.9700
N2—C51.450 (5)C3'—H3'B0.9700
N2—H2D0.8600C4'—H4'A0.9700
N3—C131.330 (4)C4'—H4'B0.9700
N3—C61.346 (4)C6—C71.461 (5)
N4—C131.341 (4)C7—C121.398 (5)
N4—C121.392 (4)C7—C81.400 (5)
N4—H4C0.8600C8—C91.374 (5)
N5—C131.338 (4)C8—H80.9300
N5—N61.379 (4)C9—C101.382 (6)
N5—H5C0.8600C9—H90.9300
N6—C141.272 (4)C10—C111.384 (6)
C1—N11.517 (7)C10—H100.9300
C1—H1B0.9600C11—C121.404 (5)
C1—H1C0.9600C11—H110.9300
C1—H1D0.9600C14—C151.450 (5)
C2—N11.430 (16)C14—H140.9300
C2—H2A0.9600C15—C201.400 (5)
C2—H2B0.9600C15—C161.404 (5)
C2—H2C0.9600C16—C171.372 (5)
N1—C31.465 (6)C16—H160.9300
N1—H1A0.9100C17—C181.386 (5)
C3—C41.510 (7)C17—H170.9300
C3—H3A0.9700C18—C191.375 (5)
C3—H3B0.9700C19—C201.378 (5)
C4—C51.620 (7)C19—H190.9300
C4—H4A0.9700C20—H200.9300
C4—H4B0.9700
O3—Cl1—O2110.00 (19)H5A—C5—H5B108.6
O3—Cl1—O1114.28 (17)H1'B—C1'—H1'C109.5
O2—Cl1—O1112.44 (19)H1'B—C1'—H1'D109.5
O3—Cl1—O4107.1 (2)H1'C—C1'—H1'D109.5
O2—Cl1—O4106.45 (18)H2'A—C2'—H2'B109.5
O1—Cl1—O4106.02 (19)H2'A—C2'—H2'C109.5
O5—Cl2—O7110.7 (3)H2'B—C2'—H2'C109.5
O5—Cl2—O6116.7 (5)C4'—C3'—H3'A109.0
O7—Cl2—O6110.9 (3)C4'—C3'—H3'B109.0
O5—Cl2—O8105.3 (3)H3'A—C3'—H3'B107.8
O7—Cl2—O8107.5 (2)C3'—C4'—H4'A110.6
O6—Cl2—O8105.0 (3)C3'—C4'—H4'B110.6
C6—N2—C5122.3 (3)H4'A—C4'—H4'B108.7
C6—N2—H2D118.8N2—C6—N3117.7 (3)
C5—N2—H2D118.8N2—C6—C7120.5 (3)
C13—N3—C6119.0 (3)N3—C6—C7121.8 (3)
C13—N4—C12120.5 (3)C12—C7—C8119.3 (3)
C13—N4—H4C119.7C12—C7—C6115.8 (3)
C12—N4—H4C119.7C8—C7—C6124.8 (3)
C13—N5—N6119.2 (3)C9—C8—C7120.7 (4)
C13—N5—H5C120.4C9—C8—H8119.6
N6—N5—H5C120.4C7—C8—H8119.6
C14—N6—N5116.2 (3)C8—C9—C10119.7 (4)
N1—C1—H1B109.5C8—C9—H9120.1
N1—C1—H1C109.5C10—C9—H9120.1
H1B—C1—H1C109.5C9—C10—C11121.2 (4)
N1—C1—H1D109.5C9—C10—H10119.4
H1B—C1—H1D109.5C11—C10—H10119.4
H1C—C1—H1D109.5C10—C11—C12119.2 (4)
N1—C2—H2A109.5C10—C11—H11120.4
N1—C2—H2B109.5C12—C11—H11120.4
H2A—C2—H2B109.5N4—C12—C7119.5 (3)
N1—C2—H2C109.5N4—C12—C11120.8 (3)
H2A—C2—H2C109.5C7—C12—C11119.8 (3)
H2B—C2—H2C109.5N3—C13—N5116.5 (3)
C2—N1—C3123.2 (6)N3—C13—N4123.4 (3)
C2—N1—C1109.2 (6)N5—C13—N4120.1 (3)
C3—N1—C197.5 (5)N6—C14—C15120.7 (3)
C2—N1—H1A108.6N6—C14—H14119.6
C3—N1—H1A108.6C15—C14—H14119.6
C1—N1—H1A108.6C20—C15—C16118.6 (3)
N1—C3—C4106.3 (5)C20—C15—C14120.6 (3)
N1—C3—H3A110.5C16—C15—C14120.8 (3)
C4—C3—H3A110.5C17—C16—C15120.1 (3)
N1—C3—H3B110.5C17—C16—H16119.9
C4—C3—H3B110.5C15—C16—H16119.9
H3A—C3—H3B108.7C16—C17—C18119.4 (3)
C3—C4—C5113.7 (5)C16—C17—H17120.3
C3—C4—H4A108.8C18—C17—H17120.3
C5—C4—H4A108.8C19—C18—C17122.2 (3)
C3—C4—H4B108.8C19—C18—Cl3118.9 (3)
C5—C4—H4B108.8C17—C18—Cl3119.0 (3)
H4A—C4—H4B107.7C18—C19—C20118.2 (3)
N2—C5—C4106.7 (4)C18—C19—H19120.9
N2—C5—H5A110.4C20—C19—H19120.9
C4—C5—H5A110.4C19—C20—C15121.5 (3)
N2—C5—H5B110.4C19—C20—H20119.3
C4—C5—H5B110.4C15—C20—H20119.3
D—H···AD—HH···AD···AD—H···A
N1—H1A···O30.912.192.990 (5)147
N5—H5C···O20.862.112.922 (4)157
N4—H4C···O1i0.862.142.964 (4)160
N2—H2D···O70.862.102.873 (5)149
C19—H19···O2ii0.932.483.316 (5)150
C1—H1D···O6iii0.962.563.445 (8)153
C1—H1C···O6iv0.962.623.555 (10)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O30.912.192.990 (5)147
N5—H5C⋯O20.862.112.922 (4)157
N4—H4C⋯O1i0.862.142.964 (4)160
N2—H2D⋯O70.862.102.873 (5)149
C19—H19⋯O2ii0.932.483.316 (5)150
C1—H1D⋯O6iii0.962.563.445 (8)153
C1—H1C⋯O6iv0.962.623.555 (10)166

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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